miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31801 5' -61 NC_006938.1 + 9014 1.11 0.000224
Target:  5'- cGCCAAGCAGGCCGCCGCCACCAUGCGg -3'
miRNA:   3'- -CGGUUCGUCCGGCGGCGGUGGUACGC- -5'
31801 5' -61 NC_006938.1 + 37511 0.79 0.054116
Target:  5'- cCCGAGCucgAGGCCGCCGCCGCUG-GCa -3'
miRNA:   3'- cGGUUCG---UCCGGCGGCGGUGGUaCGc -5'
31801 5' -61 NC_006938.1 + 8894 0.79 0.057223
Target:  5'- uGCC-AGCGGGCCGCguccagGCCGCCAUGgGa -3'
miRNA:   3'- -CGGuUCGUCCGGCGg-----CGGUGGUACgC- -5'
31801 5' -61 NC_006938.1 + 1332 0.77 0.084327
Target:  5'- cGCCuuggcAGCaAGGCCGCCGUCGCCAgagaGCu -3'
miRNA:   3'- -CGGu----UCG-UCCGGCGGCGGUGGUa---CGc -5'
31801 5' -61 NC_006938.1 + 38043 0.75 0.116933
Target:  5'- cGCCGAGCggauggccaAGGCCGCUGgCACCAcUGuCGg -3'
miRNA:   3'- -CGGUUCG---------UCCGGCGGCgGUGGU-AC-GC- -5'
31801 5' -61 NC_006938.1 + 53141 0.74 0.126761
Target:  5'- cGUCGaacuGGCAGGCUGCCuCCACCGUGg- -3'
miRNA:   3'- -CGGU----UCGUCCGGCGGcGGUGGUACgc -5'
31801 5' -61 NC_006938.1 + 47098 0.74 0.133733
Target:  5'- cGCCcaGGGCAGcGUCGuuGCCAcCCGUGUGg -3'
miRNA:   3'- -CGG--UUCGUC-CGGCggCGGU-GGUACGC- -5'
31801 5' -61 NC_006938.1 + 46974 0.73 0.15273
Target:  5'- cGCCGacgAGUGGG-CGCgCGUCACCGUGCGc -3'
miRNA:   3'- -CGGU---UCGUCCgGCG-GCGGUGGUACGC- -5'
31801 5' -61 NC_006938.1 + 24544 0.72 0.168331
Target:  5'- --uGAGaCAGGuCCGCCGCCgcgcgcugccagagGCCAUGCGc -3'
miRNA:   3'- cggUUC-GUCC-GGCGGCGG--------------UGGUACGC- -5'
31801 5' -61 NC_006938.1 + 31756 0.71 0.202818
Target:  5'- cGCCAGGaacuuGGCCGCCGCCcugucgucaaagcGCCucUGCc -3'
miRNA:   3'- -CGGUUCgu---CCGGCGGCGG-------------UGGu-ACGc -5'
31801 5' -61 NC_006938.1 + 46022 0.71 0.208598
Target:  5'- aCCAGGUucuGGGCCGucuCCGCCGCCGagGCu -3'
miRNA:   3'- cGGUUCG---UCCGGC---GGCGGUGGUa-CGc -5'
31801 5' -61 NC_006938.1 + 11666 0.71 0.208598
Target:  5'- aGCCAA--AGGCCuCCGCCACC-UGCc -3'
miRNA:   3'- -CGGUUcgUCCGGcGGCGGUGGuACGc -5'
31801 5' -61 NC_006938.1 + 52290 0.71 0.225087
Target:  5'- aCCAAaCAGGCCGCCgaagauGCCACCAccGCc -3'
miRNA:   3'- cGGUUcGUCCGGCGG------CGGUGGUa-CGc -5'
31801 5' -61 NC_006938.1 + 19125 0.7 0.242669
Target:  5'- aGUCAagagAGCAGGCCGagaagaUCGCCGagaUCAUGCGg -3'
miRNA:   3'- -CGGU----UCGUCCGGC------GGCGGU---GGUACGC- -5'
31801 5' -61 NC_006938.1 + 5577 0.7 0.255015
Target:  5'- gGCCGAGaaggAGGUCGCCGCUcucgagGCCAaGCu -3'
miRNA:   3'- -CGGUUCg---UCCGGCGGCGG------UGGUaCGc -5'
31801 5' -61 NC_006938.1 + 39861 0.7 0.255015
Target:  5'- cGUCAcAGCcaAGGCCGCUGgCACCAgUGCc -3'
miRNA:   3'- -CGGU-UCG--UCCGGCGGCgGUGGU-ACGc -5'
31801 5' -61 NC_006938.1 + 48548 0.7 0.255015
Target:  5'- cGCCAGacugcGUGGGCCGgaccuCCGCCAUCuugAUGCGg -3'
miRNA:   3'- -CGGUU-----CGUCCGGC-----GGCGGUGG---UACGC- -5'
31801 5' -61 NC_006938.1 + 62843 0.7 0.255015
Target:  5'- uGCCAGcCGGuGUgGCCGCCuCCGUGCc -3'
miRNA:   3'- -CGGUUcGUC-CGgCGGCGGuGGUACGc -5'
31801 5' -61 NC_006938.1 + 20439 0.7 0.261379
Target:  5'- uGCCuGGCGGGCgGaCGCUGCCAggUGCu -3'
miRNA:   3'- -CGGuUCGUCCGgCgGCGGUGGU--ACGc -5'
31801 5' -61 NC_006938.1 + 50089 0.7 0.267872
Target:  5'- cGCCAAcGCucAGGCCGCgaucguCGCCGCCGaggGUGu -3'
miRNA:   3'- -CGGUU-CG--UCCGGCG------GCGGUGGUa--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.