miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31801 5' -61 NC_006938.1 + 46249 0.66 0.416176
Target:  5'- cUCAAGCAGGCCacgGCgGaguaCGCgGUGCGc -3'
miRNA:   3'- cGGUUCGUCCGG---CGgCg---GUGgUACGC- -5'
31801 5' -61 NC_006938.1 + 50089 0.7 0.267872
Target:  5'- cGCCAAcGCucAGGCCGCgaucguCGCCGCCGaggGUGu -3'
miRNA:   3'- -CGGUU-CG--UCCGGCG------GCGGUGGUa--CGC- -5'
31801 5' -61 NC_006938.1 + 38714 0.69 0.288131
Target:  5'- cGUCuc-CAGGCCGCCuucaucGCgACCAUGCa -3'
miRNA:   3'- -CGGuucGUCCGGCGG------CGgUGGUACGc -5'
31801 5' -61 NC_006938.1 + 46694 0.68 0.316989
Target:  5'- aGCgGAGCAGGUCGCgcuCGUcgCACCcgGCu -3'
miRNA:   3'- -CGgUUCGUCCGGCG---GCG--GUGGuaCGc -5'
31801 5' -61 NC_006938.1 + 17517 0.68 0.34797
Target:  5'- uGCCAucgacGGCGGGCCGaaGCacUACCucccgGUGCGa -3'
miRNA:   3'- -CGGU-----UCGUCCGGCggCG--GUGG-----UACGC- -5'
31801 5' -61 NC_006938.1 + 51411 0.68 0.356047
Target:  5'- gGCC-GGCcaucGCCGCCGCUGCCAacaaUGCc -3'
miRNA:   3'- -CGGuUCGuc--CGGCGGCGGUGGU----ACGc -5'
31801 5' -61 NC_006938.1 + 50998 0.67 0.367573
Target:  5'- cGUCcuGCAGGCagucggcgcguucgaCGCUGCCACCGggGCc -3'
miRNA:   3'- -CGGuuCGUCCG---------------GCGGCGGUGGUa-CGc -5'
31801 5' -61 NC_006938.1 + 32799 0.67 0.381056
Target:  5'- cGCCcagcucaagGAGCAGGCCGacaaCC-CCGCCAaGCu -3'
miRNA:   3'- -CGG---------UUCGUCCGGC----GGcGGUGGUaCGc -5'
31801 5' -61 NC_006938.1 + 41483 0.67 0.407211
Target:  5'- cGUCGGGgacuuugccCAGGCCGCCGCgcaGCCGcucccUGCu -3'
miRNA:   3'- -CGGUUC---------GUCCGGCGGCGg--UGGU-----ACGc -5'
31801 5' -61 NC_006938.1 + 37169 0.7 0.267872
Target:  5'- cGCCAcuAGC--GCCGCCGCUcCCAUGgGc -3'
miRNA:   3'- -CGGU--UCGucCGGCGGCGGuGGUACgC- -5'
31801 5' -61 NC_006938.1 + 20439 0.7 0.261379
Target:  5'- uGCCuGGCGGGCgGaCGCUGCCAggUGCu -3'
miRNA:   3'- -CGGuUCGUCCGgCgGCGGUGGU--ACGc -5'
31801 5' -61 NC_006938.1 + 5577 0.7 0.255015
Target:  5'- gGCCGAGaaggAGGUCGCCGCUcucgagGCCAaGCu -3'
miRNA:   3'- -CGGUUCg---UCCGGCGGCGG------UGGUaCGc -5'
31801 5' -61 NC_006938.1 + 37511 0.79 0.054116
Target:  5'- cCCGAGCucgAGGCCGCCGCCGCUG-GCa -3'
miRNA:   3'- cGGUUCG---UCCGGCGGCGGUGGUaCGc -5'
31801 5' -61 NC_006938.1 + 8894 0.79 0.057223
Target:  5'- uGCC-AGCGGGCCGCguccagGCCGCCAUGgGa -3'
miRNA:   3'- -CGGuUCGUCCGGCGg-----CGGUGGUACgC- -5'
31801 5' -61 NC_006938.1 + 1332 0.77 0.084327
Target:  5'- cGCCuuggcAGCaAGGCCGCCGUCGCCAgagaGCu -3'
miRNA:   3'- -CGGu----UCG-UCCGGCGGCGGUGGUa---CGc -5'
31801 5' -61 NC_006938.1 + 38043 0.75 0.116933
Target:  5'- cGCCGAGCggauggccaAGGCCGCUGgCACCAcUGuCGg -3'
miRNA:   3'- -CGGUUCG---------UCCGGCGGCgGUGGU-AC-GC- -5'
31801 5' -61 NC_006938.1 + 46974 0.73 0.15273
Target:  5'- cGCCGacgAGUGGG-CGCgCGUCACCGUGCGc -3'
miRNA:   3'- -CGGU---UCGUCCgGCG-GCGGUGGUACGC- -5'
31801 5' -61 NC_006938.1 + 24544 0.72 0.168331
Target:  5'- --uGAGaCAGGuCCGCCGCCgcgcgcugccagagGCCAUGCGc -3'
miRNA:   3'- cggUUC-GUCC-GGCGGCGG--------------UGGUACGC- -5'
31801 5' -61 NC_006938.1 + 19125 0.7 0.242669
Target:  5'- aGUCAagagAGCAGGCCGagaagaUCGCCGagaUCAUGCGg -3'
miRNA:   3'- -CGGU----UCGUCCGGC------GGCGGU---GGUACGC- -5'
31801 5' -61 NC_006938.1 + 39861 0.7 0.255015
Target:  5'- cGUCAcAGCcaAGGCCGCUGgCACCAgUGCc -3'
miRNA:   3'- -CGGU-UCG--UCCGGCGGCgGUGGU-ACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.