Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31801 | 5' | -61 | NC_006938.1 | + | 30194 | 0.66 | 0.461783 |
Target: 5'- cCCAGGCAGaacucccaGCCuCCGCCGaaccgacCCAUGCc -3' miRNA: 3'- cGGUUCGUC--------CGGcGGCGGU-------GGUACGc -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 52018 | 0.68 | 0.34797 |
Target: 5'- cGCCGAGCccaCCGCCGCCugaccCCAgaGCGu -3' miRNA: 3'- -CGGUUCGuccGGCGGCGGu----GGUa-CGC- -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 1841 | 0.68 | 0.332215 |
Target: 5'- cGCaccaGAGCAGGCCuggggccaGuuGCCACCG-GCc -3' miRNA: 3'- -CGg---UUCGUCCGG--------CggCGGUGGUaCGc -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 53141 | 0.74 | 0.126761 |
Target: 5'- cGUCGaacuGGCAGGCUGCCuCCACCGUGg- -3' miRNA: 3'- -CGGU----UCGUCCGGCGGcGGUGGUACgc -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 16380 | 0.66 | 0.434462 |
Target: 5'- uGCUucGCGGGCCagggGCUGUCGCCGacccaGCGc -3' miRNA: 3'- -CGGuuCGUCCGG----CGGCGGUGGUa----CGC- -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 18622 | 0.66 | 0.434462 |
Target: 5'- uGCUggGaguagucgaGGGCCGCCcagagGCCACCGU-CGu -3' miRNA: 3'- -CGGuuCg--------UCCGGCGG-----CGGUGGUAcGC- -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 45286 | 0.66 | 0.42526 |
Target: 5'- cGUCAAGaGGGUCG-CGCCAuuguCUAUGCGg -3' miRNA: 3'- -CGGUUCgUCCGGCgGCGGU----GGUACGC- -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 6213 | 0.66 | 0.416176 |
Target: 5'- aGCCcguGGCuccGGCauaGUCGCC-CCAUGCc -3' miRNA: 3'- -CGGu--UCGu--CCGg--CGGCGGuGGUACGc -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 44715 | 0.66 | 0.416176 |
Target: 5'- uGCaucGUGGGaCUGCCGUCGCC-UGCGa -3' miRNA: 3'- -CGguuCGUCC-GGCGGCGGUGGuACGC- -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 11496 | 0.68 | 0.356047 |
Target: 5'- uUCAAGUAcucGGCCGCCGUCAaccCCGUuaGCGc -3' miRNA: 3'- cGGUUCGU---CCGGCGGCGGU---GGUA--CGC- -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 50462 | 0.67 | 0.398368 |
Target: 5'- -aCGAGCGguGGCCuCCGCUcCCGUGCc -3' miRNA: 3'- cgGUUCGU--CCGGcGGCGGuGGUACGc -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 51599 | 0.66 | 0.416176 |
Target: 5'- cGCCGGGCAGGuuGUU-CCACgCG-GCGa -3' miRNA: 3'- -CGGUUCGUCCggCGGcGGUG-GUaCGC- -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 63629 | 0.66 | 0.453206 |
Target: 5'- aGCCGGGUgugucuuccaGGGCaGCUGCCA--GUGCGg -3' miRNA: 3'- -CGGUUCG----------UCCGgCGGCGGUggUACGC- -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 63100 | 0.67 | 0.381056 |
Target: 5'- gGCCGAGUAuGGCCaUgGUCACCAUcGCu -3' miRNA: 3'- -CGGUUCGU-CCGGcGgCGGUGGUA-CGc -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 55749 | 0.66 | 0.443778 |
Target: 5'- gGCCcuccuccCAGGCCGCCcuuGCCGCCuccGCu -3' miRNA: 3'- -CGGuuc----GUCCGGCGG---CGGUGGua-CGc -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 31137 | 0.66 | 0.416176 |
Target: 5'- cGCCGGGaCAuaGCCGUCGCCcuucuCCAcGCGg -3' miRNA: 3'- -CGGUUC-GUc-CGGCGGCGGu----GGUaCGC- -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 39142 | 0.67 | 0.364253 |
Target: 5'- uGCCAgcgacaccAGCGGuGCCGUCGuCCugCAcaGCGg -3' miRNA: 3'- -CGGU--------UCGUC-CGGCGGC-GGugGUa-CGC- -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 17907 | 0.68 | 0.340026 |
Target: 5'- uGCCAuaggcGCGGGCCGCCuCgAUCAUGa- -3' miRNA: 3'- -CGGUu----CGUCCGGCGGcGgUGGUACgc -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 6871 | 0.66 | 0.434462 |
Target: 5'- gGCCuuGGCcucGCCGCCaGCgACCAUGUc -3' miRNA: 3'- -CGGu-UCGuc-CGGCGG-CGgUGGUACGc -5' |
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31801 | 5' | -61 | NC_006938.1 | + | 50936 | 0.66 | 0.43169 |
Target: 5'- uGCCGAGCuGGCggaGCuCGCC-CCGcgucacacccaggcUGCGa -3' miRNA: 3'- -CGGUUCGuCCGg--CG-GCGGuGGU--------------ACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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