miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31801 5' -61 NC_006938.1 + 411 0.66 0.433537
Target:  5'- gGCUuGGCA-GCCGUCGCCAUCuuggguaucaucaGUGCa -3'
miRNA:   3'- -CGGuUCGUcCGGCGGCGGUGG-------------UACGc -5'
31801 5' -61 NC_006938.1 + 1332 0.77 0.084327
Target:  5'- cGCCuuggcAGCaAGGCCGCCGUCGCCAgagaGCu -3'
miRNA:   3'- -CGGu----UCG-UCCGGCGGCGGUGGUa---CGc -5'
31801 5' -61 NC_006938.1 + 1841 0.68 0.332215
Target:  5'- cGCaccaGAGCAGGCCuggggccaGuuGCCACCG-GCc -3'
miRNA:   3'- -CGg---UUCGUCCGG--------CggCGGUGGUaCGc -5'
31801 5' -61 NC_006938.1 + 5577 0.7 0.255015
Target:  5'- gGCCGAGaaggAGGUCGCCGCUcucgagGCCAaGCu -3'
miRNA:   3'- -CGGUUCg---UCCGGCGGCGG------UGGUaCGc -5'
31801 5' -61 NC_006938.1 + 6213 0.66 0.416176
Target:  5'- aGCCcguGGCuccGGCauaGUCGCC-CCAUGCc -3'
miRNA:   3'- -CGGu--UCGu--CCGg--CGGCGGuGGUACGc -5'
31801 5' -61 NC_006938.1 + 6871 0.66 0.434462
Target:  5'- gGCCuuGGCcucGCCGCCaGCgACCAUGUc -3'
miRNA:   3'- -CGGu-UCGuc-CGGCGG-CGgUGGUACGc -5'
31801 5' -61 NC_006938.1 + 8379 0.68 0.324535
Target:  5'- -aCGAGCcGGUCGCCGaCCACCGggagGUc -3'
miRNA:   3'- cgGUUCGuCCGGCGGC-GGUGGUa---CGc -5'
31801 5' -61 NC_006938.1 + 8894 0.79 0.057223
Target:  5'- uGCC-AGCGGGCCGCguccagGCCGCCAUGgGa -3'
miRNA:   3'- -CGGuUCGUCCGGCGg-----CGGUGGUACgC- -5'
31801 5' -61 NC_006938.1 + 9014 1.11 0.000224
Target:  5'- cGCCAAGCAGGCCGCCGCCACCAUGCGg -3'
miRNA:   3'- -CGGUUCGUCCGGCGGCGGUGGUACGC- -5'
31801 5' -61 NC_006938.1 + 10675 0.66 0.443778
Target:  5'- cGgCAAGguGGUCGagggcgcaauccUCGCCACCGaGCGc -3'
miRNA:   3'- -CgGUUCguCCGGC------------GGCGGUGGUaCGC- -5'
31801 5' -61 NC_006938.1 + 11496 0.68 0.356047
Target:  5'- uUCAAGUAcucGGCCGCCGUCAaccCCGUuaGCGc -3'
miRNA:   3'- cGGUUCGU---CCGGCGGCGGU---GGUA--CGC- -5'
31801 5' -61 NC_006938.1 + 11666 0.71 0.208598
Target:  5'- aGCCAA--AGGCCuCCGCCACC-UGCc -3'
miRNA:   3'- -CGGUUcgUCCGGcGGCGGUGGuACGc -5'
31801 5' -61 NC_006938.1 + 16380 0.66 0.434462
Target:  5'- uGCUucGCGGGCCagggGCUGUCGCCGacccaGCGc -3'
miRNA:   3'- -CGGuuCGUCCGG----CGGCGGUGGUa----CGC- -5'
31801 5' -61 NC_006938.1 + 17291 0.69 0.302294
Target:  5'- cGCgGAGguGGCagaccaGCUGgcCCACCAUGCc -3'
miRNA:   3'- -CGgUUCguCCGg-----CGGC--GGUGGUACGc -5'
31801 5' -61 NC_006938.1 + 17517 0.68 0.34797
Target:  5'- uGCCAucgacGGCGGGCCGaaGCacUACCucccgGUGCGa -3'
miRNA:   3'- -CGGU-----UCGUCCGGCggCG--GUGG-----UACGC- -5'
31801 5' -61 NC_006938.1 + 17907 0.68 0.340026
Target:  5'- uGCCAuaggcGCGGGCCGCCuCgAUCAUGa- -3'
miRNA:   3'- -CGGUu----CGUCCGGCGGcGgUGGUACgc -5'
31801 5' -61 NC_006938.1 + 18622 0.66 0.434462
Target:  5'- uGCUggGaguagucgaGGGCCGCCcagagGCCACCGU-CGu -3'
miRNA:   3'- -CGGuuCg--------UCCGGCGG-----CGGUGGUAcGC- -5'
31801 5' -61 NC_006938.1 + 19125 0.7 0.242669
Target:  5'- aGUCAagagAGCAGGCCGagaagaUCGCCGagaUCAUGCGg -3'
miRNA:   3'- -CGGU----UCGUCCGGC------GGCGGU---GGUACGC- -5'
31801 5' -61 NC_006938.1 + 20439 0.7 0.261379
Target:  5'- uGCCuGGCGGGCgGaCGCUGCCAggUGCu -3'
miRNA:   3'- -CGGuUCGUCCGgCgGCGGUGGU--ACGc -5'
31801 5' -61 NC_006938.1 + 24544 0.72 0.168331
Target:  5'- --uGAGaCAGGuCCGCCGCCgcgcgcugccagagGCCAUGCGc -3'
miRNA:   3'- cggUUC-GUCC-GGCGGCGG--------------UGGUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.