miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31801 5' -61 NC_006938.1 + 63629 0.66 0.453206
Target:  5'- aGCCGGGUgugucuuccaGGGCaGCUGCCA--GUGCGg -3'
miRNA:   3'- -CGGUUCG----------UCCGgCGGCGGUggUACGC- -5'
31801 5' -61 NC_006938.1 + 63449 0.66 0.45987
Target:  5'- cGCCAaggcggugaAGCAGGCCGCuCGCgagcugaacgucccCAUCGaGUGg -3'
miRNA:   3'- -CGGU---------UCGUCCGGCG-GCG--------------GUGGUaCGC- -5'
31801 5' -61 NC_006938.1 + 63100 0.67 0.381056
Target:  5'- gGCCGAGUAuGGCCaUgGUCACCAUcGCu -3'
miRNA:   3'- -CGGUUCGU-CCGGcGgCGGUGGUA-CGc -5'
31801 5' -61 NC_006938.1 + 62843 0.7 0.255015
Target:  5'- uGCCAGcCGGuGUgGCCGCCuCCGUGCc -3'
miRNA:   3'- -CGGUUcGUC-CGgCGGCGGuGGUACGc -5'
31801 5' -61 NC_006938.1 + 55749 0.66 0.443778
Target:  5'- gGCCcuccuccCAGGCCGCCcuuGCCGCCuccGCu -3'
miRNA:   3'- -CGGuuc----GUCCGGCGG---CGGUGGua-CGc -5'
31801 5' -61 NC_006938.1 + 53141 0.74 0.126761
Target:  5'- cGUCGaacuGGCAGGCUGCCuCCACCGUGg- -3'
miRNA:   3'- -CGGU----UCGUCCGGCGGcGGUGGUACgc -5'
31801 5' -61 NC_006938.1 + 52290 0.71 0.225087
Target:  5'- aCCAAaCAGGCCGCCgaagauGCCACCAccGCc -3'
miRNA:   3'- cGGUUcGUCCGGCGG------CGGUGGUa-CGc -5'
31801 5' -61 NC_006938.1 + 52018 0.68 0.34797
Target:  5'- cGCCGAGCccaCCGCCGCCugaccCCAgaGCGu -3'
miRNA:   3'- -CGGUUCGuccGGCGGCGGu----GGUa-CGC- -5'
31801 5' -61 NC_006938.1 + 51599 0.66 0.416176
Target:  5'- cGCCGGGCAGGuuGUU-CCACgCG-GCGa -3'
miRNA:   3'- -CGGUUCGUCCggCGGcGGUG-GUaCGC- -5'
31801 5' -61 NC_006938.1 + 51411 0.68 0.356047
Target:  5'- gGCC-GGCcaucGCCGCCGCUGCCAacaaUGCc -3'
miRNA:   3'- -CGGuUCGuc--CGGCGGCGGUGGU----ACGc -5'
31801 5' -61 NC_006938.1 + 50998 0.67 0.367573
Target:  5'- cGUCcuGCAGGCagucggcgcguucgaCGCUGCCACCGggGCc -3'
miRNA:   3'- -CGGuuCGUCCG---------------GCGGCGGUGGUa-CGc -5'
31801 5' -61 NC_006938.1 + 50936 0.66 0.43169
Target:  5'- uGCCGAGCuGGCggaGCuCGCC-CCGcgucacacccaggcUGCGa -3'
miRNA:   3'- -CGGUUCGuCCGg--CG-GCGGuGGU--------------ACGC- -5'
31801 5' -61 NC_006938.1 + 50462 0.67 0.398368
Target:  5'- -aCGAGCGguGGCCuCCGCUcCCGUGCc -3'
miRNA:   3'- cgGUUCGU--CCGGcGGCGGuGGUACGc -5'
31801 5' -61 NC_006938.1 + 50089 0.7 0.267872
Target:  5'- cGCCAAcGCucAGGCCGCgaucguCGCCGCCGaggGUGu -3'
miRNA:   3'- -CGGUU-CG--UCCGGCG------GCGGUGGUa--CGC- -5'
31801 5' -61 NC_006938.1 + 48548 0.7 0.255015
Target:  5'- cGCCAGacugcGUGGGCCGgaccuCCGCCAUCuugAUGCGg -3'
miRNA:   3'- -CGGUU-----CGUCCGGC-----GGCGGUGG---UACGC- -5'
31801 5' -61 NC_006938.1 + 47098 0.74 0.133733
Target:  5'- cGCCcaGGGCAGcGUCGuuGCCAcCCGUGUGg -3'
miRNA:   3'- -CGG--UUCGUC-CGGCggCGGU-GGUACGC- -5'
31801 5' -61 NC_006938.1 + 46974 0.73 0.15273
Target:  5'- cGCCGacgAGUGGG-CGCgCGUCACCGUGCGc -3'
miRNA:   3'- -CGGU---UCGUCCgGCG-GCGGUGGUACGC- -5'
31801 5' -61 NC_006938.1 + 46694 0.68 0.316989
Target:  5'- aGCgGAGCAGGUCGCgcuCGUcgCACCcgGCu -3'
miRNA:   3'- -CGgUUCGUCCGGCG---GCG--GUGGuaCGc -5'
31801 5' -61 NC_006938.1 + 46556 0.67 0.407211
Target:  5'- uGCCuugucuGCcuGGGCCGCUGUCAUCGaGUGa -3'
miRNA:   3'- -CGGuu----CG--UCCGGCGGCGGUGGUaCGC- -5'
31801 5' -61 NC_006938.1 + 46249 0.66 0.416176
Target:  5'- cUCAAGCAGGCCacgGCgGaguaCGCgGUGCGc -3'
miRNA:   3'- cGGUUCGUCCGG---CGgCg---GUGgUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.