miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31803 5' -55.3 NC_006938.1 + 30608 0.66 0.759449
Target:  5'- uGGGAGAccgAGGAGGUCGucGGgagCaCGAacGCGCc -3'
miRNA:   3'- -UCCUCU---UCCUCCGGU--UCa--G-GUU--CGCG- -5'
31803 5' -55.3 NC_006938.1 + 35032 0.66 0.759449
Target:  5'- uAGGAGAucGGAGcGCCGAcGUUCuu-CGCg -3'
miRNA:   3'- -UCCUCUu-CCUC-CGGUU-CAGGuucGCG- -5'
31803 5' -55.3 NC_006938.1 + 17248 0.66 0.759449
Target:  5'- -cGAGAAGGAGucgcaggcggucGCCAucaacGUCCGccGCGCg -3'
miRNA:   3'- ucCUCUUCCUC------------CGGUu----CAGGUu-CGCG- -5'
31803 5' -55.3 NC_006938.1 + 13759 0.66 0.738752
Target:  5'- uGGGGGAGGuuGCCAcAGUgCC--GCGCu -3'
miRNA:   3'- uCCUCUUCCucCGGU-UCA-GGuuCGCG- -5'
31803 5' -55.3 NC_006938.1 + 38500 0.66 0.738752
Target:  5'- cGGGAcguuGAAGGucAGGCCGccaccggagaggAGUCCAuccaucagAGCGUu -3'
miRNA:   3'- -UCCU----CUUCC--UCCGGU------------UCAGGU--------UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 8078 0.66 0.738752
Target:  5'- cGGGcGGGAGcuGGGCCGGGUcgCCGAGCa- -3'
miRNA:   3'- -UCC-UCUUCc-UCCGGUUCA--GGUUCGcg -5'
31803 5' -55.3 NC_006938.1 + 32265 0.66 0.738752
Target:  5'- cAGGGGAuGG-GGCCugcAGUaCAAGgGCa -3'
miRNA:   3'- -UCCUCUuCCuCCGGu--UCAgGUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 13193 0.66 0.728237
Target:  5'- cGGGAGuGGGAcaGGCgCGuccGGUCCGAGaCGg -3'
miRNA:   3'- -UCCUCuUCCU--CCG-GU---UCAGGUUC-GCg -5'
31803 5' -55.3 NC_006938.1 + 7555 0.66 0.728237
Target:  5'- cGGGGAcGGGcaagaccacgcuGGCCAAGcaccuggCCGAGgGCg -3'
miRNA:   3'- uCCUCUuCCU------------CCGGUUCa------GGUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 41153 0.66 0.728237
Target:  5'- gAGGAcccggccacGGAGGAGG-CGAGUgcgcucCCGAGaCGCg -3'
miRNA:   3'- -UCCU---------CUUCCUCCgGUUCA------GGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 37129 0.66 0.728237
Target:  5'- cGGuGAcAGG-GGCCGGGUCaugucccGCGCg -3'
miRNA:   3'- uCCuCU-UCCuCCGGUUCAGguu----CGCG- -5'
31803 5' -55.3 NC_006938.1 + 35666 0.66 0.720819
Target:  5'- gAGGAGAugcuguccgucgccaGGGAGGagcCCAAGUuccugucCCAGGCa- -3'
miRNA:   3'- -UCCUCU---------------UCCUCC---GGUUCA-------GGUUCGcg -5'
31803 5' -55.3 NC_006938.1 + 35878 0.66 0.706933
Target:  5'- cGGGGucacacAGGGAGaGCCGAccaaugccaucG-CCAGGCGCg -3'
miRNA:   3'- uCCUC------UUCCUC-CGGUU-----------CaGGUUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 7113 0.67 0.685337
Target:  5'- cGGAGAGGucaagcuccacGAGcuCCGuccggagcGGUCCGAGCGCu -3'
miRNA:   3'- uCCUCUUC-----------CUCc-GGU--------UCAGGUUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 16941 0.67 0.674458
Target:  5'- cGGGAGuuGGGAGGCgcacuccaaCGAGgaagcaCCAgaAGCGCu -3'
miRNA:   3'- -UCCUCu-UCCUCCG---------GUUCa-----GGU--UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 29467 0.67 0.674458
Target:  5'- cGGGGAAGuGcAGGCgCAGGUuggCCAGGuUGCa -3'
miRNA:   3'- uCCUCUUC-C-UCCG-GUUCA---GGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 33282 0.67 0.674458
Target:  5'- uGGAGGAGucaGCC-GGUCCGGGCuGCa -3'
miRNA:   3'- uCCUCUUCcucCGGuUCAGGUUCG-CG- -5'
31803 5' -55.3 NC_006938.1 + 27026 0.67 0.674458
Target:  5'- cGGAGGGacAGGcCCAGGUCaCGGGcCGCg -3'
miRNA:   3'- uCCUCUUccUCC-GGUUCAG-GUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 34852 0.67 0.663538
Target:  5'- uGGuuGAGGGuGGC--AGUCCGGGcCGCg -3'
miRNA:   3'- uCCu-CUUCCuCCGguUCAGGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 30890 0.67 0.663538
Target:  5'- uGGAGAcgcAGGAGGCggacgGAGcCCAcGCGUc -3'
miRNA:   3'- uCCUCU---UCCUCCGg----UUCaGGUuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.