miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31803 5' -55.3 NC_006938.1 + 1461 0.73 0.334304
Target:  5'- cAGGAGAAGGAGcuGCCuc--CCGAGgGCg -3'
miRNA:   3'- -UCCUCUUCCUC--CGGuucaGGUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 2490 0.68 0.619673
Target:  5'- cGGAGuacuuccuGGAGGCgCAgcucgcucGGaUCCGAGCGUa -3'
miRNA:   3'- uCCUCuu------CCUCCG-GU--------UC-AGGUUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 3257 0.76 0.223106
Target:  5'- aAGG-GAGGGAgcgGGCCAAGUUCA-GCGUg -3'
miRNA:   3'- -UCCuCUUCCU---CCGGUUCAGGUuCGCG- -5'
31803 5' -55.3 NC_006938.1 + 3802 0.72 0.385348
Target:  5'- uGGAuGcAGGAGGCCucGUCCAGGaugaaCGCg -3'
miRNA:   3'- uCCU-CuUCCUCCGGuuCAGGUUC-----GCG- -5'
31803 5' -55.3 NC_006938.1 + 4155 0.69 0.522436
Target:  5'- gAGGAGcucauGGCCAuGGUCCGGGCGg -3'
miRNA:   3'- -UCCUCuuccuCCGGU-UCAGGUUCGCg -5'
31803 5' -55.3 NC_006938.1 + 5201 0.68 0.618576
Target:  5'- cAGGAcGAGGGGcgcGGCCcacagggGAGUCUAgAGCGUg -3'
miRNA:   3'- -UCCU-CUUCCU---CCGG-------UUCAGGU-UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 5580 0.68 0.630648
Target:  5'- -cGAGAAGGAGGUCGccgcucucgAGgCCAAGCu- -3'
miRNA:   3'- ucCUCUUCCUCCGGU---------UCaGGUUCGcg -5'
31803 5' -55.3 NC_006938.1 + 5678 0.71 0.441286
Target:  5'- uGGGAcuGGAGGAGGUCAcAGUCacuGGCGg -3'
miRNA:   3'- -UCCU--CUUCCUCCGGU-UCAGgu-UCGCg -5'
31803 5' -55.3 NC_006938.1 + 7113 0.67 0.685337
Target:  5'- cGGAGAGGucaagcuccacGAGcuCCGuccggagcGGUCCGAGCGCu -3'
miRNA:   3'- uCCUCUUC-----------CUCc-GGU--------UCAGGUUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 7156 0.76 0.217319
Target:  5'- cGGGGAGGGAGGUgGAG-CCGGG-GCg -3'
miRNA:   3'- uCCUCUUCCUCCGgUUCaGGUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 7165 0.7 0.511947
Target:  5'- uGGAGAcGGcgaauGGCCGAGcUCacaagaGAGCGCg -3'
miRNA:   3'- uCCUCUuCCu----CCGGUUC-AGg-----UUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 7555 0.66 0.728237
Target:  5'- cGGGGAcGGGcaagaccacgcuGGCCAAGcaccuggCCGAGgGCg -3'
miRNA:   3'- uCCUCUuCCU------------CCGGUUCa------GGUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 8078 0.66 0.738752
Target:  5'- cGGGcGGGAGcuGGGCCGGGUcgCCGAGCa- -3'
miRNA:   3'- -UCC-UCUUCc-UCCGGUUCA--GGUUCGcg -5'
31803 5' -55.3 NC_006938.1 + 9720 1.11 0.00082
Target:  5'- cAGGAGAAGGAGGCCAAGUCCAAGCGCc -3'
miRNA:   3'- -UCCUCUUCCUCCGGUUCAGGUUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 12970 0.68 0.62955
Target:  5'- cGGGAGAGGccccggcGAGcGCCuGGUCCAGGauugGCc -3'
miRNA:   3'- -UCCUCUUC-------CUC-CGGuUCAGGUUCg---CG- -5'
31803 5' -55.3 NC_006938.1 + 13193 0.66 0.728237
Target:  5'- cGGGAGuGGGAcaGGCgCGuccGGUCCGAGaCGg -3'
miRNA:   3'- -UCCUCuUCCU--CCG-GU---UCAGGUUC-GCg -5'
31803 5' -55.3 NC_006938.1 + 13759 0.66 0.738752
Target:  5'- uGGGGGAGGuuGCCAcAGUgCC--GCGCu -3'
miRNA:   3'- uCCUCUUCCucCGGU-UCA-GGuuCGCG- -5'
31803 5' -55.3 NC_006938.1 + 14364 0.68 0.630648
Target:  5'- gAGGgcuuuggcacucGGAAGGAGGUCAcuGUCCuguggaagaAGGCGUa -3'
miRNA:   3'- -UCC------------UCUUCCUCCGGUu-CAGG---------UUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 16391 0.68 0.619673
Target:  5'- cGGAGAgcGGGugcuucgcGGGCCAGGggcugucgCCGacccAGCGCu -3'
miRNA:   3'- uCCUCU--UCC--------UCCGGUUCa-------GGU----UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 16941 0.67 0.674458
Target:  5'- cGGGAGuuGGGAGGCgcacuccaaCGAGgaagcaCCAgaAGCGCu -3'
miRNA:   3'- -UCCUCu-UCCUCCG---------GUUCa-----GGU--UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.