Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31803 | 5' | -55.3 | NC_006938.1 | + | 17248 | 0.66 | 0.759449 |
Target: 5'- -cGAGAAGGAGucgcaggcggucGCCAucaacGUCCGccGCGCg -3' miRNA: 3'- ucCUCUUCCUC------------CGGUu----CAGGUu-CGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 17953 | 0.7 | 0.470927 |
Target: 5'- cAGGAGAAGGA-GUCGAGcaacagggcaUCCAGGcCGUg -3' miRNA: 3'- -UCCUCUUCCUcCGGUUC----------AGGUUC-GCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 17955 | 0.68 | 0.62955 |
Target: 5'- gGGcGGGAAGGAGGUggauguaCGAG-CCGAGCucGCu -3' miRNA: 3'- -UC-CUCUUCCUCCG-------GUUCaGGUUCG--CG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 18057 | 0.71 | 0.431643 |
Target: 5'- gAGGAccggcucauGGAGGUCGAGaUCCGAGCGa -3' miRNA: 3'- -UCCUcuu------CCUCCGGUUC-AGGUUCGCg -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 18680 | 0.7 | 0.489189 |
Target: 5'- cGGGAucuccagGAAGGAGGCCAAGaucaucuUCCuuGgGCu -3' miRNA: 3'- -UCCU-------CUUCCUCCGGUUC-------AGGuuCgCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 18889 | 0.7 | 0.48103 |
Target: 5'- uGGAGAaccucugcaAGGAccgGGCCA---CCGAGCGCg -3' miRNA: 3'- uCCUCU---------UCCU---CCGGUucaGGUUCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 20237 | 0.71 | 0.422124 |
Target: 5'- cGGGAGAccuGGuGcGCCucGUCCcAGCGCu -3' miRNA: 3'- -UCCUCUu--CCuC-CGGuuCAGGuUCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 21412 | 0.76 | 0.223106 |
Target: 5'- cGGAGGAGGcguGGGCCGAcUUCGAGCGg -3' miRNA: 3'- uCCUCUUCC---UCCGGUUcAGGUUCGCg -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 21867 | 0.68 | 0.630648 |
Target: 5'- cGGGAGGgauaccgguccGGGuuGuCCGGGUCCAGGCccuGCa -3' miRNA: 3'- -UCCUCU-----------UCCucC-GGUUCAGGUUCG---CG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 24677 | 0.68 | 0.630648 |
Target: 5'- cGGAGugcccAGGGAGGagAAGcCgCGAGCGCg -3' miRNA: 3'- uCCUC-----UUCCUCCggUUCaG-GUUCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 27022 | 0.7 | 0.48103 |
Target: 5'- gAGGAGuGGGAGcGCCGcGUCC--GCGUc -3' miRNA: 3'- -UCCUCuUCCUC-CGGUuCAGGuuCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 27026 | 0.67 | 0.674458 |
Target: 5'- cGGAGGGacAGGcCCAGGUCaCGGGcCGCg -3' miRNA: 3'- uCCUCUUccUCC-GGUUCAG-GUUC-GCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 29467 | 0.67 | 0.674458 |
Target: 5'- cGGGGAAGuGcAGGCgCAGGUuggCCAGGuUGCa -3' miRNA: 3'- uCCUCUUC-C-UCCG-GUUCA---GGUUC-GCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 30608 | 0.66 | 0.759449 |
Target: 5'- uGGGAGAccgAGGAGGUCGucGGgagCaCGAacGCGCc -3' miRNA: 3'- -UCCUCU---UCCUCCGGU--UCa--G-GUU--CGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 30837 | 0.69 | 0.522436 |
Target: 5'- uGGAGGAGGucGCCGAgGUCUcuGGgGCa -3' miRNA: 3'- uCCUCUUCCucCGGUU-CAGGu-UCgCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 30890 | 0.67 | 0.663538 |
Target: 5'- uGGAGAcgcAGGAGGCggacgGAGcCCAcGCGUc -3' miRNA: 3'- uCCUCU---UCCUCCGg----UUCaGGUuCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 31046 | 0.73 | 0.342458 |
Target: 5'- uGGAGAAGGGcgacGGCUAuGUCCcGGCGg -3' miRNA: 3'- uCCUCUUCCU----CCGGUuCAGGuUCGCg -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 32265 | 0.66 | 0.738752 |
Target: 5'- cAGGGGAuGG-GGCCugcAGUaCAAGgGCa -3' miRNA: 3'- -UCCUCUuCCuCCGGu--UCAgGUUCgCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 33282 | 0.67 | 0.674458 |
Target: 5'- uGGAGGAGucaGCC-GGUCCGGGCuGCa -3' miRNA: 3'- uCCUCUUCcucCGGuUCAGGUUCG-CG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 34555 | 0.68 | 0.60871 |
Target: 5'- cAGGAcGAGcAGGCCAgGGUCgGAGCGa -3' miRNA: 3'- -UCCUcUUCcUCCGGU-UCAGgUUCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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