Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31803 | 5' | -55.3 | NC_006938.1 | + | 4155 | 0.69 | 0.522436 |
Target: 5'- gAGGAGcucauGGCCAuGGUCCGGGCGg -3' miRNA: 3'- -UCCUCuuccuCCGGU-UCAGGUUCGCg -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 34555 | 0.68 | 0.60871 |
Target: 5'- cAGGAcGAGcAGGCCAgGGUCgGAGCGa -3' miRNA: 3'- -UCCUcUUCcUCCGGU-UCAGgUUCGCg -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 5201 | 0.68 | 0.618576 |
Target: 5'- cAGGAcGAGGGGcgcGGCCcacagggGAGUCUAgAGCGUg -3' miRNA: 3'- -UCCU-CUUCCU---CCGG-------UUCAGGU-UCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 2490 | 0.68 | 0.619673 |
Target: 5'- cGGAGuacuuccuGGAGGCgCAgcucgcucGGaUCCGAGCGUa -3' miRNA: 3'- uCCUCuu------CCUCCG-GU--------UC-AGGUUCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 16391 | 0.68 | 0.619673 |
Target: 5'- cGGAGAgcGGGugcuucgcGGGCCAGGggcugucgCCGacccAGCGCu -3' miRNA: 3'- uCCUCU--UCC--------UCCGGUUCa-------GGU----UCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 17955 | 0.68 | 0.62955 |
Target: 5'- gGGcGGGAAGGAGGUggauguaCGAG-CCGAGCucGCu -3' miRNA: 3'- -UC-CUCUUCCUCCG-------GUUCaGGUUCG--CG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 47843 | 0.68 | 0.62955 |
Target: 5'- gAGGAGAGGccuccagcacGAGGCCAGaggucuggaucucGUCCGuggcaaccGCGCu -3' miRNA: 3'- -UCCUCUUC----------CUCCGGUU-------------CAGGUu-------CGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 12970 | 0.68 | 0.62955 |
Target: 5'- cGGGAGAGGccccggcGAGcGCCuGGUCCAGGauugGCc -3' miRNA: 3'- -UCCUCUUC-------CUC-CGGuUCAGGUUCg---CG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 24677 | 0.68 | 0.630648 |
Target: 5'- cGGAGugcccAGGGAGGagAAGcCgCGAGCGCg -3' miRNA: 3'- uCCUC-----UUCCUCCggUUCaG-GUUCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 21867 | 0.68 | 0.630648 |
Target: 5'- cGGGAGGgauaccgguccGGGuuGuCCGGGUCCAGGCccuGCa -3' miRNA: 3'- -UCCUCU-----------UCCucC-GGUUCAGGUUCG---CG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 5580 | 0.68 | 0.630648 |
Target: 5'- -cGAGAAGGAGGUCGccgcucucgAGgCCAAGCu- -3' miRNA: 3'- ucCUCUUCCUCCGGU---------UCaGGUUCGcg -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 37480 | 0.68 | 0.630648 |
Target: 5'- -cGAGGAGGucauGGCCAAGUuggacaagauccCCGAGCu- -3' miRNA: 3'- ucCUCUUCCu---CCGGUUCA------------GGUUCGcg -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 14364 | 0.68 | 0.630648 |
Target: 5'- gAGGgcuuuggcacucGGAAGGAGGUCAcuGUCCuguggaagaAGGCGUa -3' miRNA: 3'- -UCC------------UCUUCCUCCGGUu-CAGG---------UUCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 34852 | 0.67 | 0.663538 |
Target: 5'- uGGuuGAGGGuGGC--AGUCCGGGcCGCg -3' miRNA: 3'- uCCu-CUUCCuCCGguUCAGGUUC-GCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 30890 | 0.67 | 0.663538 |
Target: 5'- uGGAGAcgcAGGAGGCggacgGAGcCCAcGCGUc -3' miRNA: 3'- uCCUCU---UCCUCCGg----UUCaGGUuCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 27026 | 0.67 | 0.674458 |
Target: 5'- cGGAGGGacAGGcCCAGGUCaCGGGcCGCg -3' miRNA: 3'- uCCUCUUccUCC-GGUUCAG-GUUC-GCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 33282 | 0.67 | 0.674458 |
Target: 5'- uGGAGGAGucaGCC-GGUCCGGGCuGCa -3' miRNA: 3'- uCCUCUUCcucCGGuUCAGGUUCG-CG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 29467 | 0.67 | 0.674458 |
Target: 5'- cGGGGAAGuGcAGGCgCAGGUuggCCAGGuUGCa -3' miRNA: 3'- uCCUCUUC-C-UCCG-GUUCA---GGUUC-GCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 16941 | 0.67 | 0.674458 |
Target: 5'- cGGGAGuuGGGAGGCgcacuccaaCGAGgaagcaCCAgaAGCGCu -3' miRNA: 3'- -UCCUCu-UCCUCCG---------GUUCa-----GGU--UCGCG- -5' |
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31803 | 5' | -55.3 | NC_006938.1 | + | 7113 | 0.67 | 0.685337 |
Target: 5'- cGGAGAGGucaagcuccacGAGcuCCGuccggagcGGUCCGAGCGCu -3' miRNA: 3'- uCCUCUUC-----------CUCc-GGU--------UCAGGUUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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