miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31803 5' -55.3 NC_006938.1 + 9720 1.11 0.00082
Target:  5'- cAGGAGAAGGAGGCCAAGUCCAAGCGCc -3'
miRNA:   3'- -UCCUCUUCCUCCGGUUCAGGUUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 7156 0.76 0.217319
Target:  5'- cGGGGAGGGAGGUgGAG-CCGGG-GCg -3'
miRNA:   3'- uCCUCUUCCUCCGgUUCaGGUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 21412 0.76 0.223106
Target:  5'- cGGAGGAGGcguGGGCCGAcUUCGAGCGg -3'
miRNA:   3'- uCCUCUUCC---UCCGGUUcAGGUUCGCg -5'
31803 5' -55.3 NC_006938.1 + 3257 0.76 0.223106
Target:  5'- aAGG-GAGGGAgcgGGCCAAGUUCA-GCGUg -3'
miRNA:   3'- -UCCuCUUCCU---CCGGUUCAGGUuCGCG- -5'
31803 5' -55.3 NC_006938.1 + 59516 0.75 0.247574
Target:  5'- uGGcGAAGucGGCCGGGUCCGgcGGCGCc -3'
miRNA:   3'- uCCuCUUCcuCCGGUUCAGGU--UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 61799 0.73 0.326293
Target:  5'- cAGGAGGAGGGaGCCGGuUCCAuucAGCGUc -3'
miRNA:   3'- -UCCUCUUCCUcCGGUUcAGGU---UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 1461 0.73 0.334304
Target:  5'- cAGGAGAAGGAGcuGCCuc--CCGAGgGCg -3'
miRNA:   3'- -UCCUCUUCCUC--CGGuucaGGUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 31046 0.73 0.342458
Target:  5'- uGGAGAAGGGcgacGGCUAuGUCCcGGCGg -3'
miRNA:   3'- uCCUCUUCCU----CCGGUuCAGGuUCGCg -5'
31803 5' -55.3 NC_006938.1 + 40573 0.73 0.359193
Target:  5'- gAGGAGAuccuGGAGGCCucGGUCgAGgaccucauGCGCu -3'
miRNA:   3'- -UCCUCUu---CCUCCGGu-UCAGgUU--------CGCG- -5'
31803 5' -55.3 NC_006938.1 + 3802 0.72 0.385348
Target:  5'- uGGAuGcAGGAGGCCucGUCCAGGaugaaCGCg -3'
miRNA:   3'- uCCU-CuUCCUCCGGuuCAGGUUC-----GCG- -5'
31803 5' -55.3 NC_006938.1 + 20237 0.71 0.422124
Target:  5'- cGGGAGAccuGGuGcGCCucGUCCcAGCGCu -3'
miRNA:   3'- -UCCUCUu--CCuC-CGGuuCAGGuUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 18057 0.71 0.431643
Target:  5'- gAGGAccggcucauGGAGGUCGAGaUCCGAGCGa -3'
miRNA:   3'- -UCCUcuu------CCUCCGGUUC-AGGUUCGCg -5'
31803 5' -55.3 NC_006938.1 + 5678 0.71 0.441286
Target:  5'- uGGGAcuGGAGGAGGUCAcAGUCacuGGCGg -3'
miRNA:   3'- -UCCU--CUUCCUCCGGU-UCAGgu-UCGCg -5'
31803 5' -55.3 NC_006938.1 + 52248 0.71 0.451051
Target:  5'- uGGAGGAGGuGGCCuguUCgGAGgGCu -3'
miRNA:   3'- uCCUCUUCCuCCGGuucAGgUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 17953 0.7 0.470927
Target:  5'- cAGGAGAAGGA-GUCGAGcaacagggcaUCCAGGcCGUg -3'
miRNA:   3'- -UCCUCUUCCUcCGGUUC----------AGGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 18889 0.7 0.48103
Target:  5'- uGGAGAaccucugcaAGGAccgGGCCA---CCGAGCGCg -3'
miRNA:   3'- uCCUCU---------UCCU---CCGGUucaGGUUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 27022 0.7 0.48103
Target:  5'- gAGGAGuGGGAGcGCCGcGUCC--GCGUc -3'
miRNA:   3'- -UCCUCuUCCUC-CGGUuCAGGuuCGCG- -5'
31803 5' -55.3 NC_006938.1 + 18680 0.7 0.489189
Target:  5'- cGGGAucuccagGAAGGAGGCCAAGaucaucuUCCuuGgGCu -3'
miRNA:   3'- -UCCU-------CUUCCUCCGGUUC-------AGGuuCgCG- -5'
31803 5' -55.3 NC_006938.1 + 7165 0.7 0.511947
Target:  5'- uGGAGAcGGcgaauGGCCGAGcUCacaagaGAGCGCg -3'
miRNA:   3'- uCCUCUuCCu----CCGGUUC-AGg-----UUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 30837 0.69 0.522436
Target:  5'- uGGAGGAGGucGCCGAgGUCUcuGGgGCa -3'
miRNA:   3'- uCCUCUUCCucCGGUU-CAGGu-UCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.