miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31803 5' -55.3 NC_006938.1 + 40573 0.73 0.359193
Target:  5'- gAGGAGAuccuGGAGGCCucGGUCgAGgaccucauGCGCu -3'
miRNA:   3'- -UCCUCUu---CCUCCGGu-UCAGgUU--------CGCG- -5'
31803 5' -55.3 NC_006938.1 + 18057 0.71 0.431643
Target:  5'- gAGGAccggcucauGGAGGUCGAGaUCCGAGCGa -3'
miRNA:   3'- -UCCUcuu------CCUCCGGUUC-AGGUUCGCg -5'
31803 5' -55.3 NC_006938.1 + 5678 0.71 0.441286
Target:  5'- uGGGAcuGGAGGAGGUCAcAGUCacuGGCGg -3'
miRNA:   3'- -UCCU--CUUCCUCCGGU-UCAGgu-UCGCg -5'
31803 5' -55.3 NC_006938.1 + 52248 0.71 0.451051
Target:  5'- uGGAGGAGGuGGCCuguUCgGAGgGCu -3'
miRNA:   3'- uCCUCUUCCuCCGGuucAGgUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 7165 0.7 0.511947
Target:  5'- uGGAGAcGGcgaauGGCCGAGcUCacaagaGAGCGCg -3'
miRNA:   3'- uCCUCUuCCu----CCGGUUC-AGg-----UUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 18680 0.7 0.489189
Target:  5'- cGGGAucuccagGAAGGAGGCCAAGaucaucuUCCuuGgGCu -3'
miRNA:   3'- -UCCU-------CUUCCUCCGGUUC-------AGGuuCgCG- -5'
31803 5' -55.3 NC_006938.1 + 18889 0.7 0.48103
Target:  5'- uGGAGAaccucugcaAGGAccgGGCCA---CCGAGCGCg -3'
miRNA:   3'- uCCUCU---------UCCU---CCGGUucaGGUUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 27022 0.7 0.48103
Target:  5'- gAGGAGuGGGAGcGCCGcGUCC--GCGUc -3'
miRNA:   3'- -UCCUCuUCCUC-CGGUuCAGGuuCGCG- -5'
31803 5' -55.3 NC_006938.1 + 17953 0.7 0.470927
Target:  5'- cAGGAGAAGGA-GUCGAGcaacagggcaUCCAGGcCGUg -3'
miRNA:   3'- -UCCUCUUCCUcCGGUUC----------AGGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 34852 0.67 0.663538
Target:  5'- uGGuuGAGGGuGGC--AGUCCGGGcCGCg -3'
miRNA:   3'- uCCu-CUUCCuCCGguUCAGGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 27026 0.67 0.674458
Target:  5'- cGGAGGGacAGGcCCAGGUCaCGGGcCGCg -3'
miRNA:   3'- uCCUCUUccUCC-GGUUCAG-GUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 33282 0.67 0.674458
Target:  5'- uGGAGGAGucaGCC-GGUCCGGGCuGCa -3'
miRNA:   3'- uCCUCUUCcucCGGuUCAGGUUCG-CG- -5'
31803 5' -55.3 NC_006938.1 + 29467 0.67 0.674458
Target:  5'- cGGGGAAGuGcAGGCgCAGGUuggCCAGGuUGCa -3'
miRNA:   3'- uCCUCUUC-C-UCCG-GUUCA---GGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 16941 0.67 0.674458
Target:  5'- cGGGAGuuGGGAGGCgcacuccaaCGAGgaagcaCCAgaAGCGCu -3'
miRNA:   3'- -UCCUCu-UCCUCCG---------GUUCa-----GGU--UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 41153 0.66 0.728237
Target:  5'- gAGGAcccggccacGGAGGAGG-CGAGUgcgcucCCGAGaCGCg -3'
miRNA:   3'- -UCCU---------CUUCCUCCgGUUCA------GGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 37129 0.66 0.728237
Target:  5'- cGGuGAcAGG-GGCCGGGUCaugucccGCGCg -3'
miRNA:   3'- uCCuCU-UCCuCCGGUUCAGguu----CGCG- -5'
31803 5' -55.3 NC_006938.1 + 13759 0.66 0.738752
Target:  5'- uGGGGGAGGuuGCCAcAGUgCC--GCGCu -3'
miRNA:   3'- uCCUCUUCCucCGGU-UCA-GGuuCGCG- -5'
31803 5' -55.3 NC_006938.1 + 8078 0.66 0.738752
Target:  5'- cGGGcGGGAGcuGGGCCGGGUcgCCGAGCa- -3'
miRNA:   3'- -UCC-UCUUCc-UCCGGUUCA--GGUUCGcg -5'
31803 5' -55.3 NC_006938.1 + 38500 0.66 0.738752
Target:  5'- cGGGAcguuGAAGGucAGGCCGccaccggagaggAGUCCAuccaucagAGCGUu -3'
miRNA:   3'- -UCCU----CUUCC--UCCGGU------------UCAGGU--------UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 7156 0.76 0.217319
Target:  5'- cGGGGAGGGAGGUgGAG-CCGGG-GCg -3'
miRNA:   3'- uCCUCUUCCUCCGgUUCaGGUUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.