miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31803 5' -55.3 NC_006938.1 + 61799 0.73 0.326293
Target:  5'- cAGGAGGAGGGaGCCGGuUCCAuucAGCGUc -3'
miRNA:   3'- -UCCUCUUCCUcCGGUUcAGGU---UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 59516 0.75 0.247574
Target:  5'- uGGcGAAGucGGCCGGGUCCGgcGGCGCc -3'
miRNA:   3'- uCCuCUUCcuCCGGUUCAGGU--UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 52248 0.71 0.451051
Target:  5'- uGGAGGAGGuGGCCuguUCgGAGgGCu -3'
miRNA:   3'- uCCUCUUCCuCCGGuucAGgUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 47843 0.68 0.62955
Target:  5'- gAGGAGAGGccuccagcacGAGGCCAGaggucuggaucucGUCCGuggcaaccGCGCu -3'
miRNA:   3'- -UCCUCUUC----------CUCCGGUU-------------CAGGUu-------CGCG- -5'
31803 5' -55.3 NC_006938.1 + 41153 0.66 0.728237
Target:  5'- gAGGAcccggccacGGAGGAGG-CGAGUgcgcucCCGAGaCGCg -3'
miRNA:   3'- -UCCU---------CUUCCUCCgGUUCA------GGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 40573 0.73 0.359193
Target:  5'- gAGGAGAuccuGGAGGCCucGGUCgAGgaccucauGCGCu -3'
miRNA:   3'- -UCCUCUu---CCUCCGGu-UCAGgUU--------CGCG- -5'
31803 5' -55.3 NC_006938.1 + 38500 0.66 0.738752
Target:  5'- cGGGAcguuGAAGGucAGGCCGccaccggagaggAGUCCAuccaucagAGCGUu -3'
miRNA:   3'- -UCCU----CUUCC--UCCGGU------------UCAGGU--------UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 37480 0.68 0.630648
Target:  5'- -cGAGGAGGucauGGCCAAGUuggacaagauccCCGAGCu- -3'
miRNA:   3'- ucCUCUUCCu---CCGGUUCA------------GGUUCGcg -5'
31803 5' -55.3 NC_006938.1 + 37129 0.66 0.728237
Target:  5'- cGGuGAcAGG-GGCCGGGUCaugucccGCGCg -3'
miRNA:   3'- uCCuCU-UCCuCCGGUUCAGguu----CGCG- -5'
31803 5' -55.3 NC_006938.1 + 35878 0.66 0.706933
Target:  5'- cGGGGucacacAGGGAGaGCCGAccaaugccaucG-CCAGGCGCg -3'
miRNA:   3'- uCCUC------UUCCUC-CGGUU-----------CaGGUUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 35666 0.66 0.720819
Target:  5'- gAGGAGAugcuguccgucgccaGGGAGGagcCCAAGUuccugucCCAGGCa- -3'
miRNA:   3'- -UCCUCU---------------UCCUCC---GGUUCA-------GGUUCGcg -5'
31803 5' -55.3 NC_006938.1 + 35032 0.66 0.759449
Target:  5'- uAGGAGAucGGAGcGCCGAcGUUCuu-CGCg -3'
miRNA:   3'- -UCCUCUu-CCUC-CGGUU-CAGGuucGCG- -5'
31803 5' -55.3 NC_006938.1 + 34852 0.67 0.663538
Target:  5'- uGGuuGAGGGuGGC--AGUCCGGGcCGCg -3'
miRNA:   3'- uCCu-CUUCCuCCGguUCAGGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 34555 0.68 0.60871
Target:  5'- cAGGAcGAGcAGGCCAgGGUCgGAGCGa -3'
miRNA:   3'- -UCCUcUUCcUCCGGU-UCAGgUUCGCg -5'
31803 5' -55.3 NC_006938.1 + 33282 0.67 0.674458
Target:  5'- uGGAGGAGucaGCC-GGUCCGGGCuGCa -3'
miRNA:   3'- uCCUCUUCcucCGGuUCAGGUUCG-CG- -5'
31803 5' -55.3 NC_006938.1 + 32265 0.66 0.738752
Target:  5'- cAGGGGAuGG-GGCCugcAGUaCAAGgGCa -3'
miRNA:   3'- -UCCUCUuCCuCCGGu--UCAgGUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 31046 0.73 0.342458
Target:  5'- uGGAGAAGGGcgacGGCUAuGUCCcGGCGg -3'
miRNA:   3'- uCCUCUUCCU----CCGGUuCAGGuUCGCg -5'
31803 5' -55.3 NC_006938.1 + 30890 0.67 0.663538
Target:  5'- uGGAGAcgcAGGAGGCggacgGAGcCCAcGCGUc -3'
miRNA:   3'- uCCUCU---UCCUCCGg----UUCaGGUuCGCG- -5'
31803 5' -55.3 NC_006938.1 + 30837 0.69 0.522436
Target:  5'- uGGAGGAGGucGCCGAgGUCUcuGGgGCa -3'
miRNA:   3'- uCCUCUUCCucCGGUU-CAGGu-UCgCG- -5'
31803 5' -55.3 NC_006938.1 + 30608 0.66 0.759449
Target:  5'- uGGGAGAccgAGGAGGUCGucGGgagCaCGAacGCGCc -3'
miRNA:   3'- -UCCUCU---UCCUCCGGU--UCa--G-GUU--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.