miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31803 5' -55.3 NC_006938.1 + 35032 0.66 0.759449
Target:  5'- uAGGAGAucGGAGcGCCGAcGUUCuu-CGCg -3'
miRNA:   3'- -UCCUCUu-CCUC-CGGUU-CAGGuucGCG- -5'
31803 5' -55.3 NC_006938.1 + 16391 0.68 0.619673
Target:  5'- cGGAGAgcGGGugcuucgcGGGCCAGGggcugucgCCGacccAGCGCu -3'
miRNA:   3'- uCCUCU--UCC--------UCCGGUUCa-------GGU----UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 3802 0.72 0.385348
Target:  5'- uGGAuGcAGGAGGCCucGUCCAGGaugaaCGCg -3'
miRNA:   3'- uCCU-CuUCCUCCGGuuCAGGUUC-----GCG- -5'
31803 5' -55.3 NC_006938.1 + 7156 0.76 0.217319
Target:  5'- cGGGGAGGGAGGUgGAG-CCGGG-GCg -3'
miRNA:   3'- uCCUCUUCCUCCGgUUCaGGUUCgCG- -5'
31803 5' -55.3 NC_006938.1 + 37129 0.66 0.728237
Target:  5'- cGGuGAcAGG-GGCCGGGUCaugucccGCGCg -3'
miRNA:   3'- uCCuCU-UCCuCCGGUUCAGguu----CGCG- -5'
31803 5' -55.3 NC_006938.1 + 41153 0.66 0.728237
Target:  5'- gAGGAcccggccacGGAGGAGG-CGAGUgcgcucCCGAGaCGCg -3'
miRNA:   3'- -UCCU---------CUUCCUCCgGUUCA------GGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 29467 0.67 0.674458
Target:  5'- cGGGGAAGuGcAGGCgCAGGUuggCCAGGuUGCa -3'
miRNA:   3'- uCCUCUUC-C-UCCG-GUUCA---GGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 33282 0.67 0.674458
Target:  5'- uGGAGGAGucaGCC-GGUCCGGGCuGCa -3'
miRNA:   3'- uCCUCUUCcucCGGuUCAGGUUCG-CG- -5'
31803 5' -55.3 NC_006938.1 + 30890 0.67 0.663538
Target:  5'- uGGAGAcgcAGGAGGCggacgGAGcCCAcGCGUc -3'
miRNA:   3'- uCCUCU---UCCUCCGg----UUCaGGUuCGCG- -5'
31803 5' -55.3 NC_006938.1 + 47843 0.68 0.62955
Target:  5'- gAGGAGAGGccuccagcacGAGGCCAGaggucuggaucucGUCCGuggcaaccGCGCu -3'
miRNA:   3'- -UCCUCUUC----------CUCCGGUU-------------CAGGUu-------CGCG- -5'
31803 5' -55.3 NC_006938.1 + 24677 0.68 0.630648
Target:  5'- cGGAGugcccAGGGAGGagAAGcCgCGAGCGCg -3'
miRNA:   3'- uCCUC-----UUCCUCCggUUCaG-GUUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 34852 0.67 0.663538
Target:  5'- uGGuuGAGGGuGGC--AGUCCGGGcCGCg -3'
miRNA:   3'- uCCu-CUUCCuCCGguUCAGGUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 38500 0.66 0.738752
Target:  5'- cGGGAcguuGAAGGucAGGCCGccaccggagaggAGUCCAuccaucagAGCGUu -3'
miRNA:   3'- -UCCU----CUUCC--UCCGGU------------UCAGGU--------UCGCG- -5'
31803 5' -55.3 NC_006938.1 + 12970 0.68 0.62955
Target:  5'- cGGGAGAGGccccggcGAGcGCCuGGUCCAGGauugGCc -3'
miRNA:   3'- -UCCUCUUC-------CUC-CGGuUCAGGUUCg---CG- -5'
31803 5' -55.3 NC_006938.1 + 8078 0.66 0.738752
Target:  5'- cGGGcGGGAGcuGGGCCGGGUcgCCGAGCa- -3'
miRNA:   3'- -UCC-UCUUCc-UCCGGUUCA--GGUUCGcg -5'
31803 5' -55.3 NC_006938.1 + 27026 0.67 0.674458
Target:  5'- cGGAGGGacAGGcCCAGGUCaCGGGcCGCg -3'
miRNA:   3'- uCCUCUUccUCC-GGUUCAG-GUUC-GCG- -5'
31803 5' -55.3 NC_006938.1 + 17955 0.68 0.62955
Target:  5'- gGGcGGGAAGGAGGUggauguaCGAG-CCGAGCucGCu -3'
miRNA:   3'- -UC-CUCUUCCUCCG-------GUUCaGGUUCG--CG- -5'
31803 5' -55.3 NC_006938.1 + 20237 0.71 0.422124
Target:  5'- cGGGAGAccuGGuGcGCCucGUCCcAGCGCu -3'
miRNA:   3'- -UCCUCUu--CCuC-CGGuuCAGGuUCGCG- -5'
31803 5' -55.3 NC_006938.1 + 13759 0.66 0.738752
Target:  5'- uGGGGGAGGuuGCCAcAGUgCC--GCGCu -3'
miRNA:   3'- uCCUCUUCCucCGGU-UCA-GGuuCGCG- -5'
31803 5' -55.3 NC_006938.1 + 16941 0.67 0.674458
Target:  5'- cGGGAGuuGGGAGGCgcacuccaaCGAGgaagcaCCAgaAGCGCu -3'
miRNA:   3'- -UCCUCu-UCCUCCG---------GUUCa-----GGU--UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.