Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31806 | 3' | -55.3 | NC_006938.1 | + | 62780 | 0.66 | 0.761281 |
Target: 5'- aGACGccgCCCUGCCGAGUgGCAGcgacguGGUAc -3' miRNA: 3'- cCUGUa--GGGGUGGUUCAgCGUC------UCGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 21543 | 0.66 | 0.761281 |
Target: 5'- aGugGUCCCCGCCGAGgucCGUcuccAGCu -3' miRNA: 3'- cCugUAGGGGUGGUUCa--GCGuc--UCGu -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 28495 | 0.66 | 0.750037 |
Target: 5'- uGACAUggCCCCGCCAcuccGGUgccggguugaccgUGUAGGGCGg -3' miRNA: 3'- cCUGUA--GGGGUGGU----UCA-------------GCGUCUCGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 17311 | 0.66 | 0.740731 |
Target: 5'- ---gAUCUCCGCCAGGuugcccUCGCGGAGg- -3' miRNA: 3'- ccugUAGGGGUGGUUC------AGCGUCUCgu -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 29482 | 0.66 | 0.740731 |
Target: 5'- uGAUcaGUCCCuCGCCGGGgaagUGCAGGcGCAg -3' miRNA: 3'- cCUG--UAGGG-GUGGUUCa---GCGUCU-CGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 7198 | 0.66 | 0.730288 |
Target: 5'- -cGCGUCCgCguugACCAGG-CGCAGGGCc -3' miRNA: 3'- ccUGUAGGgG----UGGUUCaGCGUCUCGu -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 7216 | 0.66 | 0.719749 |
Target: 5'- cGGACcgCUCCggACgGAGcUCGUGGAGCu -3' miRNA: 3'- -CCUGuaGGGG--UGgUUC-AGCGUCUCGu -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 11891 | 0.67 | 0.709124 |
Target: 5'- aGGcCGUCUCCACCAAGguacUCGUcaacGAGUAc -3' miRNA: 3'- -CCuGUAGGGGUGGUUC----AGCGu---CUCGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 32137 | 0.67 | 0.709124 |
Target: 5'- uGGGC-UCCCCuGCCcGGcUCGCAGAcCAu -3' miRNA: 3'- -CCUGuAGGGG-UGGuUC-AGCGUCUcGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 2962 | 0.67 | 0.709124 |
Target: 5'- cGGCGg-CCCGCC-AGUCGCgaccucGGAGCGu -3' miRNA: 3'- cCUGUagGGGUGGuUCAGCG------UCUCGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 35713 | 0.67 | 0.709124 |
Target: 5'- cGGACuUCUCCAggccuCCGAG-CGCAGuGCc -3' miRNA: 3'- -CCUGuAGGGGU-----GGUUCaGCGUCuCGu -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 8064 | 0.67 | 0.687662 |
Target: 5'- cGGACAUCCaCCGCCAGGcCaaGGA-CAa -3' miRNA: 3'- -CCUGUAGG-GGUGGUUCaGcgUCUcGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 506 | 0.67 | 0.676847 |
Target: 5'- aGuCAUCCUCGaaaaagaccUCGAGUCGCAGAGgAu -3' miRNA: 3'- cCuGUAGGGGU---------GGUUCAGCGUCUCgU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 39931 | 0.67 | 0.676847 |
Target: 5'- gGGGCGgggCCaCGCUcAGUgGCGGAGCGa -3' miRNA: 3'- -CCUGUa--GGgGUGGuUCAgCGUCUCGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 55575 | 0.67 | 0.676847 |
Target: 5'- uGGuCGUCUCUugGCCGGGUgGCgggaAGAGCAg -3' miRNA: 3'- -CCuGUAGGGG--UGGUUCAgCG----UCUCGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 19655 | 0.67 | 0.66599 |
Target: 5'- cGGugAUCUCCACCAucuccccGUCcGCGaGGCAc -3' miRNA: 3'- -CCugUAGGGGUGGUu------CAG-CGUcUCGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 34013 | 0.67 | 0.66599 |
Target: 5'- cGGACAUgCCgaaggCACCGAG-C-CAGAGCGa -3' miRNA: 3'- -CCUGUAgGG-----GUGGUUCaGcGUCUCGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 21802 | 0.68 | 0.647468 |
Target: 5'- aGGCAccUCCCCGugcugguCCAGGUCGUcuaucucagagagccGGGGCAg -3' miRNA: 3'- cCUGU--AGGGGU-------GGUUCAGCG---------------UCUCGU- -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 50729 | 0.68 | 0.644194 |
Target: 5'- uGGCAUCCuCCAgCuc-UCGCAGGGCc -3' miRNA: 3'- cCUGUAGG-GGUgGuucAGCGUCUCGu -5' |
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31806 | 3' | -55.3 | NC_006938.1 | + | 32293 | 0.68 | 0.644194 |
Target: 5'- cGGACuUCCCUggGCCAcgggugccGUgGUAGAGCAg -3' miRNA: 3'- -CCUGuAGGGG--UGGUu-------CAgCGUCUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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