miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31813 5' -55.2 NC_006938.1 + 16971 1.1 0.000925
Target:  5'- cGUGCCAACGGCAUCAACGCGGACGACg -3'
miRNA:   3'- -CACGGUUGCCGUAGUUGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 56290 0.78 0.18349
Target:  5'- cGUGCgGACGGCGuucuUCGGCaCGGGCGGCu -3'
miRNA:   3'- -CACGgUUGCCGU----AGUUGcGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 62695 0.75 0.263409
Target:  5'- cUGCCAcucggcaggGCGGCGUCuggcgcaucuuCGUGGACGGCa -3'
miRNA:   3'- cACGGU---------UGCCGUAGuu---------GCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 58906 0.74 0.307677
Target:  5'- -cGCCAACGGUGagcUUGACGCGGccaucacuGCGACg -3'
miRNA:   3'- caCGGUUGCCGU---AGUUGCGCC--------UGCUG- -5'
31813 5' -55.2 NC_006938.1 + 11277 0.74 0.315328
Target:  5'- aGUGCCAcaggccuCGGCGUCGAgGaGGAUGGCg -3'
miRNA:   3'- -CACGGUu------GCCGUAGUUgCgCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 36807 0.73 0.364224
Target:  5'- uUGCCGAUGuCGUCGACgaGCGGACGGa -3'
miRNA:   3'- cACGGUUGCcGUAGUUG--CGCCUGCUg -5'
31813 5' -55.2 NC_006938.1 + 48010 0.72 0.385199
Target:  5'- -cGCCucCGGCAucacgcUCGacaagaccucgggcgGCGCGGACGGCa -3'
miRNA:   3'- caCGGuuGCCGU------AGU---------------UGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 38622 0.72 0.399619
Target:  5'- uUGCCGaucGCGGCGuUCAGgGCGG-CGAUg -3'
miRNA:   3'- cACGGU---UGCCGU-AGUUgCGCCuGCUG- -5'
31813 5' -55.2 NC_006938.1 + 25217 0.71 0.450739
Target:  5'- -aGCCAGCGGCuuguugcuguacaggGUCGgaACGCGGcCGAg -3'
miRNA:   3'- caCGGUUGCCG---------------UAGU--UGCGCCuGCUg -5'
31813 5' -55.2 NC_006938.1 + 15463 0.71 0.460595
Target:  5'- -gGCCGcUGGCcUCGaccaggagcgggcugACGCGGGCGGCa -3'
miRNA:   3'- caCGGUuGCCGuAGU---------------UGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 52156 0.7 0.496982
Target:  5'- -cGCCGGuccgcacgaaguUGGa--CAGCGCGGACGACg -3'
miRNA:   3'- caCGGUU------------GCCguaGUUGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 19923 0.7 0.528261
Target:  5'- ---aCAACGGCuuccccGUCGGCGUGGAgGACu -3'
miRNA:   3'- cacgGUUGCCG------UAGUUGCGCCUgCUG- -5'
31813 5' -55.2 NC_006938.1 + 7301 0.7 0.528261
Target:  5'- -cGCCGGagcuccaGGCccugcgccugGUCAACGCGGACGcGCu -3'
miRNA:   3'- caCGGUUg------CCG----------UAGUUGCGCCUGC-UG- -5'
31813 5' -55.2 NC_006938.1 + 24903 0.69 0.549513
Target:  5'- cUGCCAuCGGUGUCGugauCGCGGcUGGCu -3'
miRNA:   3'- cACGGUuGCCGUAGUu---GCGCCuGCUG- -5'
31813 5' -55.2 NC_006938.1 + 61778 0.69 0.549513
Target:  5'- -aGCuCAGC-GCugcCAACGCGGugGACa -3'
miRNA:   3'- caCG-GUUGcCGua-GUUGCGCCugCUG- -5'
31813 5' -55.2 NC_006938.1 + 62369 0.69 0.549513
Target:  5'- -gGCCu-CGGC-UCAG-GUGGACGACg -3'
miRNA:   3'- caCGGuuGCCGuAGUUgCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 63359 0.69 0.549513
Target:  5'- -gGgCGGCGGCgagccgGUCGcccACGCGGugGACc -3'
miRNA:   3'- caCgGUUGCCG------UAGU---UGCGCCugCUG- -5'
31813 5' -55.2 NC_006938.1 + 44109 0.69 0.56024
Target:  5'- --aCCAACGGCAUCAGggUGaCGGACaGCa -3'
miRNA:   3'- cacGGUUGCCGUAGUU--GC-GCCUGcUG- -5'
31813 5' -55.2 NC_006938.1 + 55751 0.69 0.581857
Target:  5'- -gGCCGACGcugucucacGgAUCuuCGCGGAUGGCa -3'
miRNA:   3'- caCGGUUGC---------CgUAGuuGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 24654 0.69 0.581857
Target:  5'- -cGCgAGCGcGCAUggccucuggCAGCGCGcGGCGGCg -3'
miRNA:   3'- caCGgUUGC-CGUA---------GUUGCGC-CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.