miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31813 5' -55.2 NC_006938.1 + 22903 0.68 0.635375
Target:  5'- gGUGCCAAUcacagaGGCA-CugcuggaccagcgGAUGCGGACGAUg -3'
miRNA:   3'- -CACGGUUG------CCGUaG-------------UUGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 55751 0.69 0.581857
Target:  5'- -gGCCGACGcugucucacGgAUCuuCGCGGAUGGCa -3'
miRNA:   3'- caCGGUUGC---------CgUAGuuGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 23671 0.69 0.592732
Target:  5'- cGUGCCGAa-GCAgcgCGACGUcggccaGGGCGGCa -3'
miRNA:   3'- -CACGGUUgcCGUa--GUUGCG------CCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 30536 0.69 0.592732
Target:  5'- aUGCgCAACGGCAagaCGGCGaacauGGGCGAUg -3'
miRNA:   3'- cACG-GUUGCCGUa--GUUGCg----CCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 17893 0.69 0.592732
Target:  5'- -cGCUauGugGGCGUCuACGgcgaGGACGACu -3'
miRNA:   3'- caCGG--UugCCGUAGuUGCg---CCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 38788 0.68 0.603639
Target:  5'- -cGCCAACGaCAUCAcugGCGCGuccuucGugGACg -3'
miRNA:   3'- caCGGUUGCcGUAGU---UGCGC------CugCUG- -5'
31813 5' -55.2 NC_006938.1 + 18584 0.68 0.603639
Target:  5'- -cGCCGagauauGCGGCAUgccCGGCGCGuccgaGGCGGCg -3'
miRNA:   3'- caCGGU------UGCCGUA---GUUGCGC-----CUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 46355 0.68 0.614571
Target:  5'- -gGCCGauccagACGGacu--ACGCGGACGGCg -3'
miRNA:   3'- caCGGU------UGCCguaguUGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 42396 0.68 0.625518
Target:  5'- cUGCUuccuCGGCGUCGaguucuucgccgACGCGGccggaGCGACg -3'
miRNA:   3'- cACGGuu--GCCGUAGU------------UGCGCC-----UGCUG- -5'
31813 5' -55.2 NC_006938.1 + 44109 0.69 0.56024
Target:  5'- --aCCAACGGCAUCAGggUGaCGGACaGCa -3'
miRNA:   3'- cacGGUUGCCGUAGUU--GC-GCCUGcUG- -5'
31813 5' -55.2 NC_006938.1 + 63359 0.69 0.549513
Target:  5'- -gGgCGGCGGCgagccgGUCGcccACGCGGugGACc -3'
miRNA:   3'- caCgGUUGCCG------UAGU---UGCGCCugCUG- -5'
31813 5' -55.2 NC_006938.1 + 24903 0.69 0.549513
Target:  5'- cUGCCAuCGGUGUCGugauCGCGGcUGGCu -3'
miRNA:   3'- cACGGUuGCCGUAGUu---GCGCCuGCUG- -5'
31813 5' -55.2 NC_006938.1 + 56290 0.78 0.18349
Target:  5'- cGUGCgGACGGCGuucuUCGGCaCGGGCGGCu -3'
miRNA:   3'- -CACGgUUGCCGU----AGUUGcGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 62695 0.75 0.263409
Target:  5'- cUGCCAcucggcaggGCGGCGUCuggcgcaucuuCGUGGACGGCa -3'
miRNA:   3'- cACGGU---------UGCCGUAGuu---------GCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 58906 0.74 0.307677
Target:  5'- -cGCCAACGGUGagcUUGACGCGGccaucacuGCGACg -3'
miRNA:   3'- caCGGUUGCCGU---AGUUGCGCC--------UGCUG- -5'
31813 5' -55.2 NC_006938.1 + 48010 0.72 0.385199
Target:  5'- -cGCCucCGGCAucacgcUCGacaagaccucgggcgGCGCGGACGGCa -3'
miRNA:   3'- caCGGuuGCCGU------AGU---------------UGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 15463 0.71 0.460595
Target:  5'- -gGCCGcUGGCcUCGaccaggagcgggcugACGCGGGCGGCa -3'
miRNA:   3'- caCGGUuGCCGuAGU---------------UGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 19923 0.7 0.528261
Target:  5'- ---aCAACGGCuuccccGUCGGCGUGGAgGACu -3'
miRNA:   3'- cacgGUUGCCG------UAGUUGCGCCUgCUG- -5'
31813 5' -55.2 NC_006938.1 + 61778 0.69 0.549513
Target:  5'- -aGCuCAGC-GCugcCAACGCGGugGACa -3'
miRNA:   3'- caCG-GUUGcCGua-GUUGCGCCugCUG- -5'
31813 5' -55.2 NC_006938.1 + 62369 0.69 0.549513
Target:  5'- -gGCCu-CGGC-UCAG-GUGGACGACg -3'
miRNA:   3'- caCGGuuGCCGuAGUUgCGCCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.