miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31813 5' -55.2 NC_006938.1 + 3841 0.66 0.723084
Target:  5'- -cGcCCGACGaGCGUCuuggugaucugcGAgGUGGGCGACu -3'
miRNA:   3'- caC-GGUUGC-CGUAG------------UUgCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 4159 0.66 0.75439
Target:  5'- -aGCUcAUGGCcaugGUCcGgGCGGACGGCu -3'
miRNA:   3'- caCGGuUGCCG----UAGuUgCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 4438 0.67 0.680141
Target:  5'- uUGCCGugcgcuuugACGGgucCAUCAGCGaGGACGAg -3'
miRNA:   3'- cACGGU---------UGCC---GUAGUUGCgCCUGCUg -5'
31813 5' -55.2 NC_006938.1 + 5594 0.67 0.687728
Target:  5'- cUGCCAGCGGCGggUGGCGCGuccuggugguccucGGCGuACu -3'
miRNA:   3'- cACGGUUGCCGUa-GUUGCGC--------------CUGC-UG- -5'
31813 5' -55.2 NC_006938.1 + 7301 0.7 0.528261
Target:  5'- -cGCCGGagcuccaGGCccugcgccugGUCAACGCGGACGcGCu -3'
miRNA:   3'- caCGGUUg------CCG----------UAGUUGCGCCUGC-UG- -5'
31813 5' -55.2 NC_006938.1 + 8345 0.68 0.636471
Target:  5'- cUGCuCAACGGCcagAUCuggauCGCGG-CGGCg -3'
miRNA:   3'- cACG-GUUGCCG---UAGuu---GCGCCuGCUG- -5'
31813 5' -55.2 NC_006938.1 + 9756 0.67 0.658354
Target:  5'- -cGaCAACGuuGUCcauGGCGCGGACGACc -3'
miRNA:   3'- caCgGUUGCcgUAG---UUGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 10112 0.67 0.680141
Target:  5'- aUGCCgGACGGUGUUcGCacggagcggGUGGACGACu -3'
miRNA:   3'- cACGG-UUGCCGUAGuUG---------CGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 11277 0.74 0.315328
Target:  5'- aGUGCCAcaggccuCGGCGUCGAgGaGGAUGGCg -3'
miRNA:   3'- -CACGGUu------GCCGUAGUUgCgCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 11400 0.68 0.636471
Target:  5'- -cGCUAACGGgGUUGACGgCGGcCGAg -3'
miRNA:   3'- caCGGUUGCCgUAGUUGC-GCCuGCUg -5'
31813 5' -55.2 NC_006938.1 + 11550 0.66 0.723084
Target:  5'- --uCCGugGGCGUCGcgucguguuCGuCGGGCGGCa -3'
miRNA:   3'- cacGGUugCCGUAGUu--------GC-GCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 13743 0.69 0.592732
Target:  5'- aGUGCCGcgcuccAUGaGCAugUCAGCGCGGcCGAg -3'
miRNA:   3'- -CACGGU------UGC-CGU--AGUUGCGCCuGCUg -5'
31813 5' -55.2 NC_006938.1 + 15463 0.71 0.460595
Target:  5'- -gGCCGcUGGCcUCGaccaggagcgggcugACGCGGGCGGCa -3'
miRNA:   3'- caCGGUuGCCGuAGU---------------UGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 15536 0.67 0.68881
Target:  5'- -gGCCAGCGGCccacaucugcacgaCGACGCGacggucguucggcaGGCGACg -3'
miRNA:   3'- caCGGUUGCCGua------------GUUGCGC--------------CUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 16971 1.1 0.000925
Target:  5'- cGUGCCAACGGCAUCAACGCGGACGACg -3'
miRNA:   3'- -CACGGUUGCCGUAGUUGCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 17676 0.68 0.651796
Target:  5'- -gGCCGAgGGCAUCGACaugccgcuugucaagGCGuaucGCGACg -3'
miRNA:   3'- caCGGUUgCCGUAGUUG---------------CGCc---UGCUG- -5'
31813 5' -55.2 NC_006938.1 + 17893 0.69 0.592732
Target:  5'- -cGCUauGugGGCGUCuACGgcgaGGACGACu -3'
miRNA:   3'- caCGG--UugCCGUAGuUGCg---CCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 18288 0.67 0.665995
Target:  5'- -cGUCAuCGGCGuUCAgcugguguccggccGCGCGGAgGGCg -3'
miRNA:   3'- caCGGUuGCCGU-AGU--------------UGCGCCUgCUG- -5'
31813 5' -55.2 NC_006938.1 + 18584 0.68 0.603639
Target:  5'- -cGCCGagauauGCGGCAUgccCGGCGCGuccgaGGCGGCg -3'
miRNA:   3'- caCGGU------UGCCGUA---GUUGCGC-----CUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 19051 0.66 0.744064
Target:  5'- -gGCCAuggucGCGGCGgaCGAgGCGGGCuACg -3'
miRNA:   3'- caCGGU-----UGCCGUa-GUUgCGCCUGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.