miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31815 5' -58.2 NC_006938.1 + 17265 1.12 0.00055
Target:  5'- cGGUCGCCAUCAACGUCCGCCGCGCGGc -3'
miRNA:   3'- -CCAGCGGUAGUUGCAGGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 18289 0.77 0.155324
Target:  5'- --gCGUCAUCGGCGUUCagcugguguccgGCCGCGCGGa -3'
miRNA:   3'- ccaGCGGUAGUUGCAGG------------CGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 35915 0.76 0.186214
Target:  5'- aGGcgCGUCAUCGGacCGUUCGCCaGCGCGGc -3'
miRNA:   3'- -CCa-GCGGUAGUU--GCAGGCGG-CGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 17385 0.74 0.239653
Target:  5'- uGGUCGgCGUCGugGauggCCuuggcaaugGCCGCGCGGc -3'
miRNA:   3'- -CCAGCgGUAGUugCa---GG---------CGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 40682 0.74 0.256128
Target:  5'- --aUGCCAUCGagaacaagaucagcACGcuggcCCGCCGCGCGGa -3'
miRNA:   3'- ccaGCGGUAGU--------------UGCa----GGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 15459 0.73 0.270886
Target:  5'- uGGUCGaaGUCGaagaACGUCCGCCaGCGCc- -3'
miRNA:   3'- -CCAGCggUAGU----UGCAGGCGG-CGCGcc -5'
31815 5' -58.2 NC_006938.1 + 37472 0.73 0.298166
Target:  5'- aGGUCGUCAggcgaUCGACGUCUGCCuGUGUc- -3'
miRNA:   3'- -CCAGCGGU-----AGUUGCAGGCGG-CGCGcc -5'
31815 5' -58.2 NC_006938.1 + 14675 0.72 0.312586
Target:  5'- aGGUCuGCCAUCAG-GUcCCGCU-CGCGGa -3'
miRNA:   3'- -CCAG-CGGUAGUUgCA-GGCGGcGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 12790 0.71 0.350921
Target:  5'- cGGUagagGCgGUCuAUGUCUGCCGCGCa- -3'
miRNA:   3'- -CCAg---CGgUAGuUGCAGGCGGCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 36547 0.71 0.367163
Target:  5'- cGUCGCgagaCGUCGGCGUU--CCGCGCGGc -3'
miRNA:   3'- cCAGCG----GUAGUUGCAGgcGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 20814 0.71 0.383915
Target:  5'- --gUGCCugAUCuacCG-CCGCCGCGCGGg -3'
miRNA:   3'- ccaGCGG--UAGuu-GCaGGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 16512 0.7 0.392479
Target:  5'- --cCGCCAUgGACGUCUGUCGCaCGa -3'
miRNA:   3'- ccaGCGGUAgUUGCAGGCGGCGcGCc -5'
31815 5' -58.2 NC_006938.1 + 41601 0.7 0.409974
Target:  5'- aGGaCGCCAcgUCAGCaGggagCgGCUGCGCGGc -3'
miRNA:   3'- -CCaGCGGU--AGUUG-Ca---GgCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 63479 0.7 0.418902
Target:  5'- -cUCGCCGUCcACGuaugcacccaggUCCaCCGCGUGGg -3'
miRNA:   3'- ccAGCGGUAGuUGC------------AGGcGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 45912 0.7 0.437107
Target:  5'- cGUCucuCCAUCGGCGg--GCUGCGCGGa -3'
miRNA:   3'- cCAGc--GGUAGUUGCaggCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 8457 0.7 0.437107
Target:  5'- --cCGgCGUCcugcGCGUCCGCCGcCGCGa -3'
miRNA:   3'- ccaGCgGUAGu---UGCAGGCGGC-GCGCc -5'
31815 5' -58.2 NC_006938.1 + 48380 0.7 0.437107
Target:  5'- uGGUCGCgAUgAGCGUCCaGuCCGuCGUGa -3'
miRNA:   3'- -CCAGCGgUAgUUGCAGG-C-GGC-GCGCc -5'
31815 5' -58.2 NC_006938.1 + 36658 0.69 0.446377
Target:  5'- aGUCcuCCGgaUCGAgGcCUGCCGCGCGGa -3'
miRNA:   3'- cCAGc-GGU--AGUUgCaGGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 60432 0.69 0.455757
Target:  5'- uGGUUGCCugcagaGGCGcugagggCCGCCGCGCu- -3'
miRNA:   3'- -CCAGCGGuag---UUGCa------GGCGGCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 56196 0.69 0.465242
Target:  5'- aGGcCGCCAUCAGaGUCCaGauagGCGCGGc -3'
miRNA:   3'- -CCaGCGGUAGUUgCAGG-Cgg--CGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.