miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31815 5' -58.2 NC_006938.1 + 8457 0.7 0.437107
Target:  5'- --cCGgCGUCcugcGCGUCCGCCGcCGCGa -3'
miRNA:   3'- ccaGCgGUAGu---UGCAGGCGGC-GCGCc -5'
31815 5' -58.2 NC_006938.1 + 12790 0.71 0.350921
Target:  5'- cGGUagagGCgGUCuAUGUCUGCCGCGCa- -3'
miRNA:   3'- -CCAg---CGgUAGuUGCAGGCGGCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 14675 0.72 0.312586
Target:  5'- aGGUCuGCCAUCAG-GUcCCGCU-CGCGGa -3'
miRNA:   3'- -CCAG-CGGUAGUUgCA-GGCGGcGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 15459 0.73 0.270886
Target:  5'- uGGUCGaaGUCGaagaACGUCCGCCaGCGCc- -3'
miRNA:   3'- -CCAGCggUAGU----UGCAGGCGG-CGCGcc -5'
31815 5' -58.2 NC_006938.1 + 16512 0.7 0.392479
Target:  5'- --cCGCCAUgGACGUCUGUCGCaCGa -3'
miRNA:   3'- ccaGCGGUAgUUGCAGGCGGCGcGCc -5'
31815 5' -58.2 NC_006938.1 + 17265 1.12 0.00055
Target:  5'- cGGUCGCCAUCAACGUCCGCCGCGCGGc -3'
miRNA:   3'- -CCAGCGGUAGUUGCAGGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 17385 0.74 0.239653
Target:  5'- uGGUCGgCGUCGugGauggCCuuggcaaugGCCGCGCGGc -3'
miRNA:   3'- -CCAGCgGUAGUugCa---GG---------CGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 18127 0.67 0.606521
Target:  5'- cGGUCcUCGUCGACcuugaCGCCGCGCu- -3'
miRNA:   3'- -CCAGcGGUAGUUGcag--GCGGCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 18289 0.77 0.155324
Target:  5'- --gCGUCAUCGGCGUUCagcugguguccgGCCGCGCGGa -3'
miRNA:   3'- ccaGCGGUAGUUGCAGG------------CGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 19145 0.67 0.606521
Target:  5'- cGUaGCCcgCcuCGUCCGCCGCGaccauGGc -3'
miRNA:   3'- cCAgCGGuaGuuGCAGGCGGCGCg----CC- -5'
31815 5' -58.2 NC_006938.1 + 20081 0.69 0.465242
Target:  5'- aGUgCGCCAagcugaUCAuccagucugGCaUCCGCCGCGUGGu -3'
miRNA:   3'- cCA-GCGGU------AGU---------UGcAGGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 20507 0.66 0.669319
Target:  5'- aGUUGCCAgCGAUGUCCuugggcaccuGUCGCGaGGg -3'
miRNA:   3'- cCAGCGGUaGUUGCAGG----------CGGCGCgCC- -5'
31815 5' -58.2 NC_006938.1 + 20814 0.71 0.383915
Target:  5'- --gUGCCugAUCuacCG-CCGCCGCGCGGg -3'
miRNA:   3'- ccaGCGG--UAGuu-GCaGGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 21641 0.66 0.65888
Target:  5'- cGGUgaCCAgggCGACGUgggCCG-CGCGCGGg -3'
miRNA:   3'- -CCAgcGGUa--GUUGCA---GGCgGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 21753 0.66 0.65888
Target:  5'- aGGUUGCCcgaCAGCuggaCCG-CGCGCGGc -3'
miRNA:   3'- -CCAGCGGua-GUUGca--GGCgGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 24009 0.68 0.504157
Target:  5'- cGGUUGCaccCGUacagGugGUCCGCCcGCGCGu -3'
miRNA:   3'- -CCAGCG---GUAg---UugCAGGCGG-CGCGCc -5'
31815 5' -58.2 NC_006938.1 + 24866 0.68 0.534242
Target:  5'- --gCGCCAUggCGGCGaUCGCCGCGCc- -3'
miRNA:   3'- ccaGCGGUA--GUUGCaGGCGGCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 29441 0.66 0.65888
Target:  5'- aGGUUGCaCAUCGccaGUCCGUggguguCGCGCa- -3'
miRNA:   3'- -CCAGCG-GUAGUug-CAGGCG------GCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 32049 0.67 0.584619
Target:  5'- cGGUUGCCAUagccagaGGgGUCCGCCuucuugaGCGCc- -3'
miRNA:   3'- -CCAGCGGUAg------UUgCAGGCGG-------CGCGcc -5'
31815 5' -58.2 NC_006938.1 + 32718 0.67 0.585659
Target:  5'- --cCGCaagCAGC-UCUGCCGCGUGGc -3'
miRNA:   3'- ccaGCGguaGUUGcAGGCGGCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.