miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31815 5' -58.2 NC_006938.1 + 17265 1.12 0.00055
Target:  5'- cGGUCGCCAUCAACGUCCGCCGCGCGGc -3'
miRNA:   3'- -CCAGCGGUAGUUGCAGGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 20507 0.66 0.669319
Target:  5'- aGUUGCCAgCGAUGUCCuugggcaccuGUCGCGaGGg -3'
miRNA:   3'- cCAGCGGUaGUUGCAGG----------CGGCGCgCC- -5'
31815 5' -58.2 NC_006938.1 + 21641 0.66 0.65888
Target:  5'- cGGUgaCCAgggCGACGUgggCCG-CGCGCGGg -3'
miRNA:   3'- -CCAgcGGUa--GUUGCA---GGCgGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 52052 0.66 0.65888
Target:  5'- --aCGCCG-CGuCGUCCGCgcuguccaacuuCGUGCGGa -3'
miRNA:   3'- ccaGCGGUaGUuGCAGGCG------------GCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 41281 0.67 0.585659
Target:  5'- --cCGCCAUCAACuUCCggGCCG-GUGGc -3'
miRNA:   3'- ccaGCGGUAGUUGcAGG--CGGCgCGCC- -5'
31815 5' -58.2 NC_006938.1 + 32718 0.67 0.585659
Target:  5'- --cCGCaagCAGC-UCUGCCGCGUGGc -3'
miRNA:   3'- ccaGCGguaGUUGcAGGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 51120 0.67 0.575277
Target:  5'- ---aGCuCAUCggUGUCCaGCUGgCGCGGa -3'
miRNA:   3'- ccagCG-GUAGuuGCAGG-CGGC-GCGCC- -5'
31815 5' -58.2 NC_006938.1 + 51013 0.68 0.511114
Target:  5'- cGG-CGCguUCGACGcugccaccggggccUCCGCCGCGUu- -3'
miRNA:   3'- -CCaGCGguAGUUGC--------------AGGCGGCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 41125 0.69 0.488413
Target:  5'- --cUGCCAUCGcaACGaccauccccgcuggcUCCuucGCCGCGCGGg -3'
miRNA:   3'- ccaGCGGUAGU--UGC---------------AGG---CGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 49480 0.69 0.474828
Target:  5'- cGGcCGCCGUCGACGacaCCGUCuuCGCGa -3'
miRNA:   3'- -CCaGCGGUAGUUGCa--GGCGGc-GCGCc -5'
31815 5' -58.2 NC_006938.1 + 35915 0.76 0.186214
Target:  5'- aGGcgCGUCAUCGGacCGUUCGCCaGCGCGGc -3'
miRNA:   3'- -CCa-GCGGUAGUU--GCAGGCGG-CGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 40682 0.74 0.256128
Target:  5'- --aUGCCAUCGagaacaagaucagcACGcuggcCCGCCGCGCGGa -3'
miRNA:   3'- ccaGCGGUAGU--------------UGCa----GGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 36547 0.71 0.367163
Target:  5'- cGUCGCgagaCGUCGGCGUU--CCGCGCGGc -3'
miRNA:   3'- cCAGCG----GUAGUUGCAGgcGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 20814 0.71 0.383915
Target:  5'- --gUGCCugAUCuacCG-CCGCCGCGCGGg -3'
miRNA:   3'- ccaGCGG--UAGuu-GCaGGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 16512 0.7 0.392479
Target:  5'- --cCGCCAUgGACGUCUGUCGCaCGa -3'
miRNA:   3'- ccaGCGGUAgUUGCAGGCGGCGcGCc -5'
31815 5' -58.2 NC_006938.1 + 20081 0.69 0.465242
Target:  5'- aGUgCGCCAagcugaUCAuccagucugGCaUCCGCCGCGUGGu -3'
miRNA:   3'- cCA-GCGGU------AGU---------UGcAGGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 18289 0.77 0.155324
Target:  5'- --gCGUCAUCGGCGUUCagcugguguccgGCCGCGCGGa -3'
miRNA:   3'- ccaGCGGUAGUUGCAGG------------CGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 29441 0.66 0.65888
Target:  5'- aGGUUGCaCAUCGccaGUCCGUggguguCGCGCa- -3'
miRNA:   3'- -CCAGCG-GUAGUug-CAGGCG------GCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 51270 0.66 0.627462
Target:  5'- gGGUUGgCggCGAUGgcagCCGUcagCGCGCGGa -3'
miRNA:   3'- -CCAGCgGuaGUUGCa---GGCG---GCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 61772 0.67 0.616985
Target:  5'- cGUCGUCAcaGAgGUCCggGCCGCGCc- -3'
miRNA:   3'- cCAGCGGUagUUgCAGG--CGGCGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.