miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31821 3' -54.8 NC_006938.1 + 63422 0.66 0.80073
Target:  5'- cUGGGACUGgccgcuCUACCaCAAGaUCGCc -3'
miRNA:   3'- -ACCCUGGCacu---GAUGGaGUUCgAGCG- -5'
31821 3' -54.8 NC_006938.1 + 19928 0.66 0.80073
Target:  5'- cUGGGGuCCuUGG--ACUUCAGGUUCGCc -3'
miRNA:   3'- -ACCCU-GGcACUgaUGGAGUUCGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 39315 0.66 0.794973
Target:  5'- cUGGaACCGgGuCUACCcggagcggaagcagaUCAAGUUCGCa -3'
miRNA:   3'- -ACCcUGGCaCuGAUGG---------------AGUUCGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 17542 0.66 0.791102
Target:  5'- aGGGACC-UGugUcCUUCAAGUggggaUCGUa -3'
miRNA:   3'- aCCCUGGcACugAuGGAGUUCG-----AGCG- -5'
31821 3' -54.8 NC_006938.1 + 18538 0.66 0.791102
Target:  5'- cGGGACgGcuGCUGCUgcauguUCAcguGCUCGCa -3'
miRNA:   3'- aCCCUGgCacUGAUGG------AGUu--CGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 63497 0.66 0.791102
Target:  5'- gUGGGGCgGUGACUGgCgcacguUCAAGgaCGg -3'
miRNA:   3'- -ACCCUGgCACUGAUgG------AGUUCgaGCg -5'
31821 3' -54.8 NC_006938.1 + 52187 0.66 0.78131
Target:  5'- aGGGAgCGUGugaACUGCUcgaagUCGAaCUCGCc -3'
miRNA:   3'- aCCCUgGCAC---UGAUGG-----AGUUcGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 37620 0.66 0.775361
Target:  5'- aUGGcGGCCucguccagcuugccaGcGGCggcgGCCUCGAGCUCGg -3'
miRNA:   3'- -ACC-CUGG---------------CaCUGa---UGGAGUUCGAGCg -5'
31821 3' -54.8 NC_006938.1 + 2066 0.66 0.771366
Target:  5'- aGGGGCCGguucuacGACUGCgC-CGAGCagGUg -3'
miRNA:   3'- aCCCUGGCa------CUGAUG-GaGUUCGagCG- -5'
31821 3' -54.8 NC_006938.1 + 20940 0.67 0.730288
Target:  5'- cUGGGAgCaGUGACccUAUCUgGucGCUCGCa -3'
miRNA:   3'- -ACCCUgG-CACUG--AUGGAgUu-CGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 5121 0.67 0.730288
Target:  5'- cUGGuGACCGUGccACUGCaa-GAGCUUGa -3'
miRNA:   3'- -ACC-CUGGCAC--UGAUGgagUUCGAGCg -5'
31821 3' -54.8 NC_006938.1 + 30010 0.67 0.730288
Target:  5'- aGGuGGCCGUGGCaGCUcaugagcCAGGcCUCGCc -3'
miRNA:   3'- aCC-CUGGCACUGaUGGa------GUUC-GAGCG- -5'
31821 3' -54.8 NC_006938.1 + 19547 0.67 0.709124
Target:  5'- gGGGACUGcGugUGCCUCGcGgaCGg -3'
miRNA:   3'- aCCCUGGCaCugAUGGAGUuCgaGCg -5'
31821 3' -54.8 NC_006938.1 + 48264 0.67 0.698425
Target:  5'- gUGGGAUUG-GGCUugC-CGAGCgucCGCu -3'
miRNA:   3'- -ACCCUGGCaCUGAugGaGUUCGa--GCG- -5'
31821 3' -54.8 NC_006938.1 + 34455 0.67 0.698425
Target:  5'- cGGGAUcaucugcagCGUGG-UGCCUCGguGGCUCGg -3'
miRNA:   3'- aCCCUG---------GCACUgAUGGAGU--UCGAGCg -5'
31821 3' -54.8 NC_006938.1 + 54708 0.68 0.691974
Target:  5'- gGGGAagGUGACUGugaagguccgguuguCCgUCAcGCUCGCa -3'
miRNA:   3'- aCCCUggCACUGAU---------------GG-AGUuCGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 39207 0.68 0.687662
Target:  5'- cGGGACCuUGGCggaGCCgaugcCAAGCU-GCa -3'
miRNA:   3'- aCCCUGGcACUGa--UGGa----GUUCGAgCG- -5'
31821 3' -54.8 NC_006938.1 + 41441 0.68 0.66599
Target:  5'- cUGGGACUccacgGGCU-CCUUcAGCUCGUu -3'
miRNA:   3'- -ACCCUGGca---CUGAuGGAGuUCGAGCG- -5'
31821 3' -54.8 NC_006938.1 + 56940 0.68 0.66599
Target:  5'- cGGGGCCugaGUGcGCUGCacaUUggGCUCGa -3'
miRNA:   3'- aCCCUGG---CAC-UGAUGg--AGuuCGAGCg -5'
31821 3' -54.8 NC_006938.1 + 29150 0.69 0.611441
Target:  5'- gGuGGAgaGUcucGGCUAUCUCAAGCUCGa -3'
miRNA:   3'- aC-CCUggCA---CUGAUGGAGUUCGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.