miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31821 5' -55 NC_006938.1 + 19838 1.15 0.000599
Target:  5'- uGGGCGAACCUGAAGUCCAAGGACCCCa -3'
miRNA:   3'- -CCCGCUUGGACUUCAGGUUCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 31864 0.77 0.230791
Target:  5'- aGGGUGu-CCUGGAG-CCGgucguggcagggaAGGACCCCg -3'
miRNA:   3'- -CCCGCuuGGACUUCaGGU-------------UCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 2891 0.76 0.276236
Target:  5'- cGGGCcgccGGACCUGAcucgaAGUCCGAgcGGACCUg -3'
miRNA:   3'- -CCCG----CUUGGACU-----UCAGGUU--CCUGGGg -5'
31821 5' -55 NC_006938.1 + 57754 0.75 0.315389
Target:  5'- gGGGCGGACCUGAcccuggagguggaggGGaucUCCGAGaGCUCCg -3'
miRNA:   3'- -CCCGCUUGGACU---------------UC---AGGUUCcUGGGG- -5'
31821 5' -55 NC_006938.1 + 54994 0.74 0.343741
Target:  5'- aGGGCGuucCCUGGAGgcaCCAGggucGGACCCg -3'
miRNA:   3'- -CCCGCuu-GGACUUCa--GGUU----CCUGGGg -5'
31821 5' -55 NC_006938.1 + 27426 0.72 0.431714
Target:  5'- aGGCGGACCUGAAG-CCAugu-CCCUu -3'
miRNA:   3'- cCCGCUUGGACUUCaGGUuccuGGGG- -5'
31821 5' -55 NC_006938.1 + 46324 0.72 0.431714
Target:  5'- uGGCcuGCUUGAGGUCCAgaGGGAUgCCu -3'
miRNA:   3'- cCCGcuUGGACUUCAGGU--UCCUGgGG- -5'
31821 5' -55 NC_006938.1 + 3230 0.72 0.441214
Target:  5'- uGGCGGACCUGAcGGaCCugauGGGugUCCu -3'
miRNA:   3'- cCCGCUUGGACU-UCaGGu---UCCugGGG- -5'
31821 5' -55 NC_006938.1 + 34978 0.72 0.441214
Target:  5'- gGGGCGAACgUguugucgacGAAGUCCAGGuugggcguGACCaCCa -3'
miRNA:   3'- -CCCGCUUGgA---------CUUCAGGUUC--------CUGG-GG- -5'
31821 5' -55 NC_006938.1 + 26572 0.72 0.460563
Target:  5'- aGGCGAACCUGGA---CAAGGcCCUCg -3'
miRNA:   3'- cCCGCUUGGACUUcagGUUCCuGGGG- -5'
31821 5' -55 NC_006938.1 + 46286 0.71 0.480353
Target:  5'- uGGCGAACgaGcucuUCC-AGGACCCCa -3'
miRNA:   3'- cCCGCUUGgaCuuc-AGGuUCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 19894 0.71 0.490402
Target:  5'- cGGCGAGCUUGAGGUagUCAcGGuCCCa -3'
miRNA:   3'- cCCGCUUGGACUUCA--GGUuCCuGGGg -5'
31821 5' -55 NC_006938.1 + 17974 0.71 0.507705
Target:  5'- aGGGCauccaggccgugugGGACCUGGAGUCaAAGGugCUUc -3'
miRNA:   3'- -CCCG--------------CUUGGACUUCAGgUUCCugGGG- -5'
31821 5' -55 NC_006938.1 + 12958 0.7 0.552536
Target:  5'- cGGCGAgcGCCU--GGUCCAGGauuGGCCCa -3'
miRNA:   3'- cCCGCU--UGGAcuUCAGGUUC---CUGGGg -5'
31821 5' -55 NC_006938.1 + 29897 0.7 0.573803
Target:  5'- -cGCGAuCCUGuggaucuGGUCCGGGcuGGCCCCu -3'
miRNA:   3'- ccCGCUuGGACu------UCAGGUUC--CUGGGG- -5'
31821 5' -55 NC_006938.1 + 61746 0.7 0.58451
Target:  5'- cGGCGAcuACCUGGAGUUCGAucACgCCa -3'
miRNA:   3'- cCCGCU--UGGACUUCAGGUUccUGgGG- -5'
31821 5' -55 NC_006938.1 + 17565 0.69 0.638449
Target:  5'- cGGCGAcaACCUGGacgcGGcCCAGGuGCUCCg -3'
miRNA:   3'- cCCGCU--UGGACU----UCaGGUUCcUGGGG- -5'
31821 5' -55 NC_006938.1 + 49623 0.69 0.638449
Target:  5'- --uUGAGCCaGAAGU-CGAGGACCUCg -3'
miRNA:   3'- cccGCUUGGaCUUCAgGUUCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 42608 0.69 0.638449
Target:  5'- gGGGCGGugGCgucgaUGGAGUUCGAGGgaaccGCCUCg -3'
miRNA:   3'- -CCCGCU--UGg----ACUUCAGGUUCC-----UGGGG- -5'
31821 5' -55 NC_006938.1 + 40568 0.69 0.638449
Target:  5'- cGGaCGAGgagauCCUGGAGgccucggUCGAGGACCUCa -3'
miRNA:   3'- cCC-GCUU-----GGACUUCa------GGUUCCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.