miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31821 5' -55 NC_006938.1 + 1305 0.67 0.74462
Target:  5'- aGGGCG-GCCaGAAGUCCGGccgugagaguGGACacuaugaCCa -3'
miRNA:   3'- -CCCGCuUGGaCUUCAGGUU----------CCUGg------GG- -5'
31821 5' -55 NC_006938.1 + 2891 0.76 0.276236
Target:  5'- cGGGCcgccGGACCUGAcucgaAGUCCGAgcGGACCUg -3'
miRNA:   3'- -CCCG----CUUGGACU-----UCAGGUU--CCUGGGg -5'
31821 5' -55 NC_006938.1 + 3230 0.72 0.441214
Target:  5'- uGGCGGACCUGAcGGaCCugauGGGugUCCu -3'
miRNA:   3'- cCCGCUUGGACU-UCaGGu---UCCugGGG- -5'
31821 5' -55 NC_006938.1 + 6805 0.65 0.813039
Target:  5'- aGGCcGACCUGuccacggucgacAAGgCCGAGGGCUCUu -3'
miRNA:   3'- cCCGcUUGGAC------------UUCaGGUUCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 8247 0.68 0.670818
Target:  5'- cGGCGAAUaaGAggauccgccAGUUCAAGGGCUUCg -3'
miRNA:   3'- cCCGCUUGgaCU---------UCAGGUUCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 10265 0.65 0.813039
Target:  5'- cGGCcguGACCU--GGUCCGAGGucuuUCCCu -3'
miRNA:   3'- cCCGc--UUGGAcuUCAGGUUCCu---GGGG- -5'
31821 5' -55 NC_006938.1 + 12316 0.68 0.68155
Target:  5'- aGGCGcuCCgagggGAucgagGGUCCAuggacaacGGACCCCa -3'
miRNA:   3'- cCCGCuuGGa----CU-----UCAGGUu-------CCUGGGG- -5'
31821 5' -55 NC_006938.1 + 12444 0.68 0.696497
Target:  5'- -cGUGAACCUGuaguccugcaggaugGGGUCCGuuguccauGGACCCUc -3'
miRNA:   3'- ccCGCUUGGAC---------------UUCAGGUu-------CCUGGGG- -5'
31821 5' -55 NC_006938.1 + 12958 0.7 0.552536
Target:  5'- cGGCGAgcGCCU--GGUCCAGGauuGGCCCa -3'
miRNA:   3'- cCCGCU--UGGAcuUCAGGUUC---CUGGGg -5'
31821 5' -55 NC_006938.1 + 13224 0.68 0.649257
Target:  5'- cGGGCGGG-CUGAcAGUCCu-GGcUCCCg -3'
miRNA:   3'- -CCCGCUUgGACU-UCAGGuuCCuGGGG- -5'
31821 5' -55 NC_006938.1 + 14725 0.66 0.784612
Target:  5'- uGGCGAACCgGAcc-UCGAGGuuCCCg -3'
miRNA:   3'- cCCGCUUGGaCUucaGGUUCCugGGG- -5'
31821 5' -55 NC_006938.1 + 15296 0.66 0.774817
Target:  5'- uGGCGucgcgcAGCUUGGAGaa-GAGGACCCUc -3'
miRNA:   3'- cCCGC------UUGGACUUCaggUUCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 17465 0.67 0.74462
Target:  5'- aGGGUGGACauguCUGgcGgcugCCAGcuGGACUCCg -3'
miRNA:   3'- -CCCGCUUG----GACuuCa---GGUU--CCUGGGG- -5'
31821 5' -55 NC_006938.1 + 17565 0.69 0.638449
Target:  5'- cGGCGAcaACCUGGacgcGGcCCAGGuGCUCCg -3'
miRNA:   3'- cCCGCU--UGGACU----UCaGGUUCcUGGGG- -5'
31821 5' -55 NC_006938.1 + 17793 0.66 0.774817
Target:  5'- cGGaGAGCa-GAAGUCCAAG-ACCCUc -3'
miRNA:   3'- cCCgCUUGgaCUUCAGGUUCcUGGGG- -5'
31821 5' -55 NC_006938.1 + 17974 0.71 0.507705
Target:  5'- aGGGCauccaggccgugugGGACCUGGAGUCaAAGGugCUUc -3'
miRNA:   3'- -CCCG--------------CUUGGACUUCAGgUUCCugGGG- -5'
31821 5' -55 NC_006938.1 + 19838 1.15 0.000599
Target:  5'- uGGGCGAACCUGAAGUCCAAGGACCCCa -3'
miRNA:   3'- -CCCGCUUGGACUUCAGGUUCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 19894 0.71 0.490402
Target:  5'- cGGCGAGCUUGAGGUagUCAcGGuCCCa -3'
miRNA:   3'- cCCGCUUGGACUUCA--GGUuCCuGGGg -5'
31821 5' -55 NC_006938.1 + 20027 0.66 0.794255
Target:  5'- aGGCGcucCCUGGAGUCCuccacgccgacGGGGAagccguuguaUCCCa -3'
miRNA:   3'- cCCGCuu-GGACUUCAGG-----------UUCCU----------GGGG- -5'
31821 5' -55 NC_006938.1 + 20501 0.67 0.74462
Target:  5'- cGGGCGAguuGCCagcGAuGUCCuuGGGCaCCUg -3'
miRNA:   3'- -CCCGCU---UGGa--CUuCAGGuuCCUG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.