Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31821 | 5' | -55 | NC_006938.1 | + | 34697 | 0.67 | 0.713433 |
Target: 5'- aGGGCGGACagcugCUGGAcuccguGUCCAGGGAgCg- -3' miRNA: 3'- -CCCGCUUG-----GACUU------CAGGUUCCUgGgg -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 13224 | 0.68 | 0.649257 |
Target: 5'- cGGGCGGG-CUGAcAGUCCu-GGcUCCCg -3' miRNA: 3'- -CCCGCUUgGACU-UCAGGuuCCuGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 40844 | 0.68 | 0.670818 |
Target: 5'- aGGCGuuCCUGGAGUCaggcacGACCUCg -3' miRNA: 3'- cCCGCuuGGACUUCAGguuc--CUGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 32661 | 0.68 | 0.670818 |
Target: 5'- cGGCaucauCCgGAggaagacguacgAGUUCGAGGACCCCg -3' miRNA: 3'- cCCGcuu--GGaCU------------UCAGGUUCCUGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 8247 | 0.68 | 0.670818 |
Target: 5'- cGGCGAAUaaGAggauccgccAGUUCAAGGGCUUCg -3' miRNA: 3'- cCCGCUUGgaCU---------UCAGGUUCCUGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 12316 | 0.68 | 0.68155 |
Target: 5'- aGGCGcuCCgagggGAucgagGGUCCAuggacaacGGACCCCa -3' miRNA: 3'- cCCGCuuGGa----CU-----UCAGGUu-------CCUGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 28221 | 0.68 | 0.702868 |
Target: 5'- cGGcGCGGAUCUGGauGGggcacaccuaCGAGGGCUCCg -3' miRNA: 3'- -CC-CGCUUGGACU--UCag--------GUUCCUGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 50746 | 0.68 | 0.702868 |
Target: 5'- -cGCaGGGCCUGgcGUCCGGGGcACUgCg -3' miRNA: 3'- ccCG-CUUGGACuuCAGGUUCC-UGGgG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 55666 | 0.67 | 0.713433 |
Target: 5'- aGGGCG-GCCUGGGag--GAGGGCCCa -3' miRNA: 3'- -CCCGCuUGGACUUcaggUUCCUGGGg -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 17565 | 0.69 | 0.638449 |
Target: 5'- cGGCGAcaACCUGGacgcGGcCCAGGuGCUCCg -3' miRNA: 3'- cCCGCU--UGGACU----UCaGGUUCcUGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 40568 | 0.69 | 0.638449 |
Target: 5'- cGGaCGAGgagauCCUGGAGgccucggUCGAGGACCUCa -3' miRNA: 3'- cCC-GCUU-----GGACUUCa------GGUUCCUGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 61746 | 0.7 | 0.58451 |
Target: 5'- cGGCGAcuACCUGGAGUUCGAucACgCCa -3' miRNA: 3'- cCCGCU--UGGACUUCAGGUUccUGgGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 31864 | 0.77 | 0.230791 |
Target: 5'- aGGGUGu-CCUGGAG-CCGgucguggcagggaAGGACCCCg -3' miRNA: 3'- -CCCGCuuGGACUUCaGGU-------------UCCUGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 2891 | 0.76 | 0.276236 |
Target: 5'- cGGGCcgccGGACCUGAcucgaAGUCCGAgcGGACCUg -3' miRNA: 3'- -CCCG----CUUGGACU-----UCAGGUU--CCUGGGg -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 57754 | 0.75 | 0.315389 |
Target: 5'- gGGGCGGACCUGAcccuggagguggaggGGaucUCCGAGaGCUCCg -3' miRNA: 3'- -CCCGCUUGGACU---------------UC---AGGUUCcUGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 54994 | 0.74 | 0.343741 |
Target: 5'- aGGGCGuucCCUGGAGgcaCCAGggucGGACCCg -3' miRNA: 3'- -CCCGCuu-GGACUUCa--GGUU----CCUGGGg -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 27426 | 0.72 | 0.431714 |
Target: 5'- aGGCGGACCUGAAG-CCAugu-CCCUu -3' miRNA: 3'- cCCGCUUGGACUUCaGGUuccuGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 26572 | 0.72 | 0.460563 |
Target: 5'- aGGCGAACCUGGA---CAAGGcCCUCg -3' miRNA: 3'- cCCGCUUGGACUUcagGUUCCuGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 46286 | 0.71 | 0.480353 |
Target: 5'- uGGCGAACgaGcucuUCC-AGGACCCCa -3' miRNA: 3'- cCCGCUUGgaCuuc-AGGuUCCUGGGG- -5' |
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31821 | 5' | -55 | NC_006938.1 | + | 17974 | 0.71 | 0.507705 |
Target: 5'- aGGGCauccaggccgugugGGACCUGGAGUCaAAGGugCUUc -3' miRNA: 3'- -CCCG--------------CUUGGACUUCAGgUUCCugGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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