miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31829 3' -56.3 NC_006938.1 + 53672 0.66 0.73206
Target:  5'- uGCGAUcucucCAACCGUCAuGGCggccaacaccgcguaCGCCCUGg -3'
miRNA:   3'- -UGCUGu----GUUGGCAGU-UCGa--------------GCGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 32819 0.66 0.731026
Target:  5'- cCGACAaccCCGcCAAGCUgGCCgCGu -3'
miRNA:   3'- uGCUGUguuGGCaGUUCGAgCGGgGC- -5'
31829 3' -56.3 NC_006938.1 + 24420 0.66 0.72999
Target:  5'- gGCGACAUccucuACCGUCucacgugggacauGGGCuUCGgCCCGu -3'
miRNA:   3'- -UGCUGUGu----UGGCAG-------------UUCG-AGCgGGGC- -5'
31829 3' -56.3 NC_006938.1 + 37560 0.66 0.720627
Target:  5'- uUGGcCAUGACC-UCcucgugauuGAGCUCGCCCCa -3'
miRNA:   3'- uGCU-GUGUUGGcAG---------UUCGAGCGGGGc -5'
31829 3' -56.3 NC_006938.1 + 16215 0.66 0.710144
Target:  5'- gUGugGCAGCgGUCGacccAGC-CGCCCUc -3'
miRNA:   3'- uGCugUGUUGgCAGU----UCGaGCGGGGc -5'
31829 3' -56.3 NC_006938.1 + 3457 0.66 0.710144
Target:  5'- gGCGACccgaACAAuCCGuUCAAccagccGCUCGUCCCu -3'
miRNA:   3'- -UGCUG----UGUU-GGC-AGUU------CGAGCGGGGc -5'
31829 3' -56.3 NC_006938.1 + 34411 0.66 0.699587
Target:  5'- uGCGACAUcguGCCGgagcCAgaccAGC-CGCCCCu -3'
miRNA:   3'- -UGCUGUGu--UGGCa---GU----UCGaGCGGGGc -5'
31829 3' -56.3 NC_006938.1 + 9871 0.66 0.699587
Target:  5'- -aGGC-Cu-CCGUCGAGCUgGCCCa- -3'
miRNA:   3'- ugCUGuGuuGGCAGUUCGAgCGGGgc -5'
31829 3' -56.3 NC_006938.1 + 10126 0.66 0.699587
Target:  5'- -gGACACGuuguccGCCGUC-AGCgagaUCGUCCCu -3'
miRNA:   3'- ugCUGUGU------UGGCAGuUCG----AGCGGGGc -5'
31829 3' -56.3 NC_006938.1 + 8568 0.66 0.688967
Target:  5'- aACGACugGGCCucUCGGcGCUCGUgCCa -3'
miRNA:   3'- -UGCUGugUUGGc-AGUU-CGAGCGgGGc -5'
31829 3' -56.3 NC_006938.1 + 15277 0.66 0.678296
Target:  5'- uCGACACGACCucgccuucGUCGagaAGUUCGCCaaGa -3'
miRNA:   3'- uGCUGUGUUGG--------CAGU---UCGAGCGGggC- -5'
31829 3' -56.3 NC_006938.1 + 55978 0.67 0.667581
Target:  5'- -gGGCACcuGGCCGgagccCucGCUCGCCUCGa -3'
miRNA:   3'- ugCUGUG--UUGGCa----GuuCGAGCGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 52461 0.67 0.656836
Target:  5'- gACGACGcCGACCGgCGAGauccCGCUCCa -3'
miRNA:   3'- -UGCUGU-GUUGGCaGUUCga--GCGGGGc -5'
31829 3' -56.3 NC_006938.1 + 19810 0.67 0.656836
Target:  5'- cCGugACuACC-UCAAGCUCGCCg-- -3'
miRNA:   3'- uGCugUGuUGGcAGUUCGAGCGGggc -5'
31829 3' -56.3 NC_006938.1 + 28454 0.67 0.65576
Target:  5'- gGCGGCcggagggACAGCUGUCcAGCcaucaccuUgGCCCCGg -3'
miRNA:   3'- -UGCUG-------UGUUGGCAGuUCG--------AgCGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 46985 0.67 0.653607
Target:  5'- uUGGCAUcccaGGCgGUCuggaacagugugagGAGCUCGUCCCGa -3'
miRNA:   3'- uGCUGUG----UUGgCAG--------------UUCGAGCGGGGC- -5'
31829 3' -56.3 NC_006938.1 + 48573 0.67 0.646068
Target:  5'- gGCGAUGgGGCCGcCAGGUUUGCCaCGc -3'
miRNA:   3'- -UGCUGUgUUGGCaGUUCGAGCGGgGC- -5'
31829 3' -56.3 NC_006938.1 + 6713 0.67 0.646068
Target:  5'- -gGACACAACaGUCcAGCgaugCGCCCa- -3'
miRNA:   3'- ugCUGUGUUGgCAGuUCGa---GCGGGgc -5'
31829 3' -56.3 NC_006938.1 + 8888 0.67 0.646068
Target:  5'- gGCGACACGGCCcaUCcccucucugAAGCUCuCCCCc -3'
miRNA:   3'- -UGCUGUGUUGGc-AG---------UUCGAGcGGGGc -5'
31829 3' -56.3 NC_006938.1 + 42537 0.67 0.64499
Target:  5'- aACGGCAaggguucCGGCCGagggaguggCAGGCgUCGCUCCGg -3'
miRNA:   3'- -UGCUGU-------GUUGGCa--------GUUCG-AGCGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.