miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31843 3' -55.8 NC_006938.1 + 29245 1.13 0.000572
Target:  5'- aUGAACCUGCACGAGGCAAUCGGCCGCg -3'
miRNA:   3'- -ACUUGGACGUGCUCCGUUAGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 51485 0.83 0.07085
Target:  5'- gGAGCCgggGCAguCGAGGCGAUCGucGCCGCg -3'
miRNA:   3'- aCUUGGa--CGU--GCUCCGUUAGC--CGGCG- -5'
31843 3' -55.8 NC_006938.1 + 59610 0.74 0.282932
Target:  5'- gUGAGCCUGgCccggACGAGGCuggcAUCcGCCGCg -3'
miRNA:   3'- -ACUUGGAC-G----UGCUCCGu---UAGcCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 60433 0.74 0.282932
Target:  5'- cUGGuuGCCUGCA-GAGGCGcuGagGGCCGCc -3'
miRNA:   3'- -ACU--UGGACGUgCUCCGU--UagCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 59202 0.73 0.311534
Target:  5'- gGAACauacguuCUGCugGAGGCGGUucUGGCgGCg -3'
miRNA:   3'- aCUUG-------GACGugCUCCGUUA--GCCGgCG- -5'
31843 3' -55.8 NC_006938.1 + 30956 0.73 0.327822
Target:  5'- aGAAUgUGCuCGGGGUcGUCGGCgGCc -3'
miRNA:   3'- aCUUGgACGuGCUCCGuUAGCCGgCG- -5'
31843 3' -55.8 NC_006938.1 + 9874 0.73 0.335797
Target:  5'- gGAGCCguacgGCAuucCGAGcGCc-UCGGCCGCg -3'
miRNA:   3'- aCUUGGa----CGU---GCUC-CGuuAGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 24302 0.72 0.360565
Target:  5'- aGcGCCUcCACGAGGUgcucGA-CGGCCGCa -3'
miRNA:   3'- aCuUGGAcGUGCUCCG----UUaGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 58754 0.72 0.395519
Target:  5'- cGAGCUaacguuggaggUGUuccagaucaGCGAGGCGGUUGGCCGa -3'
miRNA:   3'- aCUUGG-----------ACG---------UGCUCCGUUAGCCGGCg -5'
31843 3' -55.8 NC_006938.1 + 54539 0.71 0.413797
Target:  5'- aGAACCUGUcguugaagucCGGGGUcGUCagGGCCGCg -3'
miRNA:   3'- aCUUGGACGu---------GCUCCGuUAG--CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 53814 0.71 0.423129
Target:  5'- gGAGCCacugGCACccuGGGCAccgaGGCCGCg -3'
miRNA:   3'- aCUUGGa---CGUGc--UCCGUuag-CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 4610 0.71 0.432586
Target:  5'- ----aCUGCGC-AGGCAGUCGGaggaCCGCa -3'
miRNA:   3'- acuugGACGUGcUCCGUUAGCC----GGCG- -5'
31843 3' -55.8 NC_006938.1 + 520 0.71 0.441202
Target:  5'- aUGuAACCUGCACuGAugauacccaagauGGCGA-CGGCUGCc -3'
miRNA:   3'- -AC-UUGGACGUG-CU-------------CCGUUaGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 32913 0.7 0.460691
Target:  5'- cGAGCCacgcgGCcagcuugGCGGGGUuGUCGGCCuGCu -3'
miRNA:   3'- aCUUGGa----CG-------UGCUCCGuUAGCCGG-CG- -5'
31843 3' -55.8 NC_006938.1 + 28943 0.69 0.512321
Target:  5'- -cGAUCUGCACGAcucGGCAGUUGGguuugacgccUCGCa -3'
miRNA:   3'- acUUGGACGUGCU---CCGUUAGCC----------GGCG- -5'
31843 3' -55.8 NC_006938.1 + 53432 0.69 0.512321
Target:  5'- -cGACCUGCGCGGuGGCAAguUCGacuucGCCGa -3'
miRNA:   3'- acUUGGACGUGCU-CCGUU--AGC-----CGGCg -5'
31843 3' -55.8 NC_006938.1 + 31050 0.69 0.522731
Target:  5'- aUGGACgaGgGCGaAGGCGGcguccuucUUGGCCGCc -3'
miRNA:   3'- -ACUUGgaCgUGC-UCCGUU--------AGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 29143 0.69 0.543785
Target:  5'- -cGAUCUGCACaagaGGGGCc-UCGGCCGa -3'
miRNA:   3'- acUUGGACGUG----CUCCGuuAGCCGGCg -5'
31843 3' -55.8 NC_006938.1 + 5985 0.69 0.543785
Target:  5'- cGGACCUaCACGAGGCGuguaGCCGa -3'
miRNA:   3'- aCUUGGAcGUGCUCCGUuagcCGGCg -5'
31843 3' -55.8 NC_006938.1 + 34857 0.69 0.543785
Target:  5'- -cAAUCUGguUGAggguGGCAGUCcgGGCCGCg -3'
miRNA:   3'- acUUGGACguGCU----CCGUUAG--CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.