miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31843 3' -55.8 NC_006938.1 + 520 0.71 0.441202
Target:  5'- aUGuAACCUGCACuGAugauacccaagauGGCGA-CGGCUGCc -3'
miRNA:   3'- -AC-UUGGACGUG-CU-------------CCGUUaGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 635 0.66 0.737406
Target:  5'- aGAugCUcGCGCaGAGGCugacaGGuuGCg -3'
miRNA:   3'- aCUugGA-CGUG-CUCCGuuag-CCggCG- -5'
31843 3' -55.8 NC_006938.1 + 4610 0.71 0.432586
Target:  5'- ----aCUGCGC-AGGCAGUCGGaggaCCGCa -3'
miRNA:   3'- acuugGACGUGcUCCGUUAGCC----GGCG- -5'
31843 3' -55.8 NC_006938.1 + 5985 0.69 0.543785
Target:  5'- cGGACCUaCACGAGGCGuguaGCCGa -3'
miRNA:   3'- aCUUGGAcGUGCUCCGUuagcCGGCg -5'
31843 3' -55.8 NC_006938.1 + 6138 0.68 0.586645
Target:  5'- gGAGCCacggGCuACGAGGacg-CGGaCCGCu -3'
miRNA:   3'- aCUUGGa---CG-UGCUCCguuaGCC-GGCG- -5'
31843 3' -55.8 NC_006938.1 + 8795 0.66 0.726961
Target:  5'- aGAGCUU-CAgaGAGGgGAUgGGCCGUg -3'
miRNA:   3'- aCUUGGAcGUg-CUCCgUUAgCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 9874 0.73 0.335797
Target:  5'- gGAGCCguacgGCAuucCGAGcGCc-UCGGCCGCg -3'
miRNA:   3'- aCUUGGa----CGU---GCUC-CGuuAGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 9964 0.67 0.651868
Target:  5'- aGGAgCUcCAgGAGGac-UCGGCCGCu -3'
miRNA:   3'- aCUUgGAcGUgCUCCguuAGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 11616 0.66 0.726961
Target:  5'- cGGAaguaCUGCuuGuGGauGUCGGCCGCc -3'
miRNA:   3'- aCUUg---GACGugCuCCguUAGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 12557 0.67 0.673568
Target:  5'- uUGAACCaGCggaagGCGAucguGGCGAUCaGCaCGCg -3'
miRNA:   3'- -ACUUGGaCG-----UGCU----CCGUUAGcCG-GCG- -5'
31843 3' -55.8 NC_006938.1 + 14000 0.68 0.565109
Target:  5'- -cGACCUugacacggucgaGCACGucGGCAuAUCGGgCCGCg -3'
miRNA:   3'- acUUGGA------------CGUGCu-CCGU-UAGCC-GGCG- -5'
31843 3' -55.8 NC_006938.1 + 15549 0.67 0.630096
Target:  5'- cGcuCCUGguCGAGGCcagCGGCC-Ca -3'
miRNA:   3'- aCuuGGACguGCUCCGuuaGCCGGcG- -5'
31843 3' -55.8 NC_006938.1 + 17667 0.68 0.608331
Target:  5'- cUGGGCCUGgGcCGAGGgcAUCGacauGCCGCu -3'
miRNA:   3'- -ACUUGGACgU-GCUCCguUAGC----CGGCG- -5'
31843 3' -55.8 NC_006938.1 + 18628 0.68 0.575855
Target:  5'- gGcuCCUGCugGGaGUAGUCgagGGCCGCc -3'
miRNA:   3'- aCuuGGACGugCUcCGUUAG---CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 21629 0.66 0.734283
Target:  5'- ----gCUGCugGAcGGCGgugaccagggcgacGUgGGCCGCg -3'
miRNA:   3'- acuugGACGugCU-CCGU--------------UAgCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 21691 0.68 0.596389
Target:  5'- gGAGCCUGUgggaagaGCGAGaGCuccacggacuGGUCGGCCu- -3'
miRNA:   3'- aCUUGGACG-------UGCUC-CG----------UUAGCCGGcg -5'
31843 3' -55.8 NC_006938.1 + 24302 0.72 0.360565
Target:  5'- aGcGCCUcCACGAGGUgcucGA-CGGCCGCa -3'
miRNA:   3'- aCuUGGAcGUGCUCCG----UUaGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 24873 0.68 0.608331
Target:  5'- uUGAGCUgcgcCAUGGcGGCGAUCG-CCGCg -3'
miRNA:   3'- -ACUUGGac--GUGCU-CCGUUAGCcGGCG- -5'
31843 3' -55.8 NC_006938.1 + 26060 0.66 0.716424
Target:  5'- cGuACCgGCuGCGuGGCAGcUGGUCGCg -3'
miRNA:   3'- aCuUGGaCG-UGCuCCGUUaGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 26115 0.67 0.651868
Target:  5'- -aGACCugauggUGCAUGuGGCAGgccacgGGCCGCg -3'
miRNA:   3'- acUUGG------ACGUGCuCCGUUag----CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.