miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31843 3' -55.8 NC_006938.1 + 33789 0.66 0.716424
Target:  5'- gGAAgCaGUACGAcGCcuAUCGGCUGCg -3'
miRNA:   3'- aCUUgGaCGUGCUcCGu-UAGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 17667 0.68 0.608331
Target:  5'- cUGGGCCUGgGcCGAGGgcAUCGacauGCCGCu -3'
miRNA:   3'- -ACUUGGACgU-GCUCCguUAGC----CGGCG- -5'
31843 3' -55.8 NC_006938.1 + 9964 0.67 0.651868
Target:  5'- aGGAgCUcCAgGAGGac-UCGGCCGCu -3'
miRNA:   3'- aCUUgGAcGUgCUCCguuAGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 26115 0.67 0.651868
Target:  5'- -aGACCugauggUGCAUGuGGCAGgccacgGGCCGCg -3'
miRNA:   3'- acUUGG------ACGUGCuCCGUUag----CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 57270 0.67 0.673568
Target:  5'- cGAGCCgcucGCGC-AGGCAuUCuucuucgaGGCCGUg -3'
miRNA:   3'- aCUUGGa---CGUGcUCCGUuAG--------CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 50998 0.67 0.684366
Target:  5'- cGu-CCUGC---AGGCAGUCGGCgCGUu -3'
miRNA:   3'- aCuuGGACGugcUCCGUUAGCCG-GCG- -5'
31843 3' -55.8 NC_006938.1 + 28910 0.66 0.702605
Target:  5'- gUGAacaACUUGCACGAGcGCcggaaggcggAGUCaacaagaggcucgaGGCCGCu -3'
miRNA:   3'- -ACU---UGGACGUGCUC-CG----------UUAG--------------CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 33840 0.66 0.705805
Target:  5'- gGGACgCUGU-CGAGGCGAugaUCGGUgugaUGCa -3'
miRNA:   3'- aCUUG-GACGuGCUCCGUU---AGCCG----GCG- -5'
31843 3' -55.8 NC_006938.1 + 26060 0.66 0.716424
Target:  5'- cGuACCgGCuGCGuGGCAGcUGGUCGCg -3'
miRNA:   3'- aCuUGGaCG-UGCuCCGUUaGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 6138 0.68 0.586645
Target:  5'- gGAGCCacggGCuACGAGGacg-CGGaCCGCu -3'
miRNA:   3'- aCUUGGa---CG-UGCUCCguuaGCC-GGCG- -5'
31843 3' -55.8 NC_006938.1 + 14000 0.68 0.565109
Target:  5'- -cGACCUugacacggucgaGCACGucGGCAuAUCGGgCCGCg -3'
miRNA:   3'- acUUGGA------------CGUGCu-CCGU-UAGCC-GGCG- -5'
31843 3' -55.8 NC_006938.1 + 29143 0.69 0.543785
Target:  5'- -cGAUCUGCACaagaGGGGCc-UCGGCCGa -3'
miRNA:   3'- acUUGGACGUG----CUCCGuuAGCCGGCg -5'
31843 3' -55.8 NC_006938.1 + 51485 0.83 0.07085
Target:  5'- gGAGCCgggGCAguCGAGGCGAUCGucGCCGCg -3'
miRNA:   3'- aCUUGGa--CGU--GCUCCGUUAGC--CGGCG- -5'
31843 3' -55.8 NC_006938.1 + 59202 0.73 0.311534
Target:  5'- gGAACauacguuCUGCugGAGGCGGUucUGGCgGCg -3'
miRNA:   3'- aCUUG-------GACGugCUCCGUUA--GCCGgCG- -5'
31843 3' -55.8 NC_006938.1 + 24302 0.72 0.360565
Target:  5'- aGcGCCUcCACGAGGUgcucGA-CGGCCGCa -3'
miRNA:   3'- aCuUGGAcGUGCUCCG----UUaGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 58754 0.72 0.395519
Target:  5'- cGAGCUaacguuggaggUGUuccagaucaGCGAGGCGGUUGGCCGa -3'
miRNA:   3'- aCUUGG-----------ACG---------UGCUCCGUUAGCCGGCg -5'
31843 3' -55.8 NC_006938.1 + 53814 0.71 0.423129
Target:  5'- gGAGCCacugGCACccuGGGCAccgaGGCCGCg -3'
miRNA:   3'- aCUUGGa---CGUGc--UCCGUuag-CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 4610 0.71 0.432586
Target:  5'- ----aCUGCGC-AGGCAGUCGGaggaCCGCa -3'
miRNA:   3'- acuugGACGUGcUCCGUUAGCC----GGCG- -5'
31843 3' -55.8 NC_006938.1 + 53432 0.69 0.512321
Target:  5'- -cGACCUGCGCGGuGGCAAguUCGacuucGCCGa -3'
miRNA:   3'- acUUGGACGUGCU-CCGUU--AGC-----CGGCg -5'
31843 3' -55.8 NC_006938.1 + 5985 0.69 0.543785
Target:  5'- cGGACCUaCACGAGGCGuguaGCCGa -3'
miRNA:   3'- aCUUGGAcGUGCUCCGUuagcCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.