Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31846 | 5' | -60.2 | NC_006938.1 | + | 23868 | 0.66 | 0.474799 |
Target: 5'- aGGGCCGGugcgCUgAGCgugacaccgGCCCUCCGUCUg -3' miRNA: 3'- cCUCGGUCua--GG-UCG---------UGGGAGGCGGA- -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 45987 | 0.66 | 0.504456 |
Target: 5'- cGGuGCCAGcacAUUCAGCACCaacgugCUGCUg -3' miRNA: 3'- -CCuCGGUC---UAGGUCGUGGga----GGCGGa -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 32937 | 0.66 | 0.504456 |
Target: 5'- -cGGCCAcGAUgucCCAGCuGCCCUCgaGCCa -3' miRNA: 3'- ccUCGGU-CUA---GGUCG-UGGGAGg-CGGa -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 23116 | 0.66 | 0.504456 |
Target: 5'- aGGAguGCCAGAcgugcuccaccUCCAGCuCCCgcgaCCaGCCg -3' miRNA: 3'- -CCU--CGGUCU-----------AGGUCGuGGGa---GG-CGGa -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 57141 | 0.66 | 0.503455 |
Target: 5'- aGAGCC--GUCCAuGCaaauaaaACCCUCCGCg- -3' miRNA: 3'- cCUCGGucUAGGU-CG-------UGGGAGGCGga -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 37122 | 0.66 | 0.494478 |
Target: 5'- aGGGGCCGGGucaugUCCcGCGCgCCggUCCGgCUg -3' miRNA: 3'- -CCUCGGUCU-----AGGuCGUG-GG--AGGCgGA- -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 56514 | 0.66 | 0.484591 |
Target: 5'- aGGAGCCcaAGGUCgucgaacuGCGCCUUCUGCa- -3' miRNA: 3'- -CCUCGG--UCUAGgu------CGUGGGAGGCGga -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 40726 | 0.66 | 0.484591 |
Target: 5'- uGAGCCAGGauguuUCCAacgaccaccuGC-CCCggUCCGCCa -3' miRNA: 3'- cCUCGGUCU-----AGGU----------CGuGGG--AGGCGGa -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 13312 | 0.66 | 0.474799 |
Target: 5'- gGGAGCCAGGacugUCAGCccGCCCgUCucggaccggacgCGCCUg -3' miRNA: 3'- -CCUCGGUCUa---GGUCG--UGGG-AG------------GCGGA- -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 29655 | 0.66 | 0.494478 |
Target: 5'- uGGAGgaGGAUCUGGCucgacgagccGCCCcugCCGCCg -3' miRNA: 3'- -CCUCggUCUAGGUCG----------UGGGa--GGCGGa -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 7142 | 0.66 | 0.45552 |
Target: 5'- cGGAGC--GGUCCgAGCGCUC-CCGCUg -3' miRNA: 3'- -CCUCGguCUAGG-UCGUGGGaGGCGGa -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 19514 | 0.66 | 0.474799 |
Target: 5'- aGAGCCuug-CCAGUACUCggcuucacCCGCCUg -3' miRNA: 3'- cCUCGGucuaGGUCGUGGGa-------GGCGGA- -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 23517 | 0.67 | 0.426497 |
Target: 5'- cGGGCCAGGUCgAGgaGCUCUCCggagaggGCCUu -3' miRNA: 3'- cCUCGGUCUAGgUCg-UGGGAGG-------CGGA- -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 42034 | 0.67 | 0.400365 |
Target: 5'- cGAGCCGGGUCCAGagACCagggugccCCGCUc -3' miRNA: 3'- cCUCGGUCUAGGUCg-UGGga------GGCGGa -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 35490 | 0.67 | 0.446039 |
Target: 5'- cGGGCCGGGUgcgCCAGCGCaucuucgagauCCUCgaCGCCa -3' miRNA: 3'- cCUCGGUCUA---GGUCGUG-----------GGAG--GCGGa -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 34031 | 0.67 | 0.408365 |
Target: 5'- cGAGCCAGAgcgaCCAGCggguccaGgCCUCCggGCCg -3' miRNA: 3'- cCUCGGUCUa---GGUCG-------UgGGAGG--CGGa -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 53870 | 0.67 | 0.409261 |
Target: 5'- cGGAGCCGGGgcaaUCgAGUucuGCCaaCCGCCa -3' miRNA: 3'- -CCUCGGUCU----AGgUCG---UGGgaGGCGGa -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 28350 | 0.67 | 0.427416 |
Target: 5'- cGGGGCCaAGGUgauggcuggaCAGCuguCCCUCCgGCCg -3' miRNA: 3'- -CCUCGG-UCUAg---------GUCGu--GGGAGG-CGGa -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 55516 | 0.67 | 0.446039 |
Target: 5'- aGGGGCCAcGccUCGGCgACCuCUCCGUCUc -3' miRNA: 3'- -CCUCGGU-CuaGGUCG-UGG-GAGGCGGA- -5' |
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31846 | 5' | -60.2 | NC_006938.1 | + | 54183 | 0.68 | 0.366043 |
Target: 5'- uGGcAGUCAcucgcGAcgCCAGCAacaaCCUCCGCCUc -3' miRNA: 3'- -CC-UCGGU-----CUa-GGUCGUg---GGAGGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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