miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31846 5' -60.2 NC_006938.1 + 29890 1.09 0.000392
Target:  5'- cGGAGCCAGAUCCAGCACCCUCCGCCUc -3'
miRNA:   3'- -CCUCGGUCUAGGUCGUGGGAGGCGGA- -5'
31846 5' -60.2 NC_006938.1 + 45987 0.66 0.504456
Target:  5'- cGGuGCCAGcacAUUCAGCACCaacgugCUGCUg -3'
miRNA:   3'- -CCuCGGUC---UAGGUCGUGGga----GGCGGa -5'
31846 5' -60.2 NC_006938.1 + 29655 0.66 0.494478
Target:  5'- uGGAGgaGGAUCUGGCucgacgagccGCCCcugCCGCCg -3'
miRNA:   3'- -CCUCggUCUAGGUCG----------UGGGa--GGCGGa -5'
31846 5' -60.2 NC_006938.1 + 7142 0.66 0.45552
Target:  5'- cGGAGC--GGUCCgAGCGCUC-CCGCUg -3'
miRNA:   3'- -CCUCGguCUAGG-UCGUGGGaGGCGGa -5'
31846 5' -60.2 NC_006938.1 + 35490 0.67 0.446039
Target:  5'- cGGGCCGGGUgcgCCAGCGCaucuucgagauCCUCgaCGCCa -3'
miRNA:   3'- cCUCGGUCUA---GGUCGUG-----------GGAG--GCGGa -5'
31846 5' -60.2 NC_006938.1 + 55516 0.67 0.446039
Target:  5'- aGGGGCCAcGccUCGGCgACCuCUCCGUCUc -3'
miRNA:   3'- -CCUCGGU-CuaGGUCG-UGG-GAGGCGGA- -5'
31846 5' -60.2 NC_006938.1 + 28350 0.67 0.427416
Target:  5'- cGGGGCCaAGGUgauggcuggaCAGCuguCCCUCCgGCCg -3'
miRNA:   3'- -CCUCGG-UCUAg---------GUCGu--GGGAGG-CGGa -5'
31846 5' -60.2 NC_006938.1 + 53870 0.67 0.409261
Target:  5'- cGGAGCCGGGgcaaUCgAGUucuGCCaaCCGCCa -3'
miRNA:   3'- -CCUCGGUCU----AGgUCG---UGGgaGGCGGa -5'
31846 5' -60.2 NC_006938.1 + 34031 0.67 0.408365
Target:  5'- cGAGCCAGAgcgaCCAGCggguccaGgCCUCCggGCCg -3'
miRNA:   3'- cCUCGGUCUa---GGUCG-------UgGGAGG--CGGa -5'
31846 5' -60.2 NC_006938.1 + 54183 0.68 0.366043
Target:  5'- uGGcAGUCAcucgcGAcgCCAGCAacaaCCUCCGCCUc -3'
miRNA:   3'- -CC-UCGGU-----CUa-GGUCGUg---GGAGGCGGA- -5'
31846 5' -60.2 NC_006938.1 + 41252 0.68 0.349659
Target:  5'- gGGAGCCAucuccauguGggUCAGCAa-CUCCGCCa -3'
miRNA:   3'- -CCUCGGU---------CuaGGUCGUggGAGGCGGa -5'
31846 5' -60.2 NC_006938.1 + 49187 0.71 0.243692
Target:  5'- cGGAGCCuuugaccugaAGAUCCAGCAgg--CCGCCa -3'
miRNA:   3'- -CCUCGG----------UCUAGGUCGUgggaGGCGGa -5'
31846 5' -60.2 NC_006938.1 + 34424 0.74 0.141472
Target:  5'- cGGAGCCAGA-CCAGCcgcCCCUCCuuggGCUc -3'
miRNA:   3'- -CCUCGGUCUaGGUCGu--GGGAGG----CGGa -5'
31846 5' -60.2 NC_006938.1 + 13312 0.66 0.474799
Target:  5'- gGGAGCCAGGacugUCAGCccGCCCgUCucggaccggacgCGCCUg -3'
miRNA:   3'- -CCUCGGUCUa---GGUCG--UGGG-AG------------GCGGA- -5'
31846 5' -60.2 NC_006938.1 + 40726 0.66 0.484591
Target:  5'- uGAGCCAGGauguuUCCAacgaccaccuGC-CCCggUCCGCCa -3'
miRNA:   3'- cCUCGGUCU-----AGGU----------CGuGGG--AGGCGGa -5'
31846 5' -60.2 NC_006938.1 + 56514 0.66 0.484591
Target:  5'- aGGAGCCcaAGGUCgucgaacuGCGCCUUCUGCa- -3'
miRNA:   3'- -CCUCGG--UCUAGgu------CGUGGGAGGCGga -5'
31846 5' -60.2 NC_006938.1 + 37122 0.66 0.494478
Target:  5'- aGGGGCCGGGucaugUCCcGCGCgCCggUCCGgCUg -3'
miRNA:   3'- -CCUCGGUCU-----AGGuCGUG-GG--AGGCgGA- -5'
31846 5' -60.2 NC_006938.1 + 57141 0.66 0.503455
Target:  5'- aGAGCC--GUCCAuGCaaauaaaACCCUCCGCg- -3'
miRNA:   3'- cCUCGGucUAGGU-CG-------UGGGAGGCGga -5'
31846 5' -60.2 NC_006938.1 + 23116 0.66 0.504456
Target:  5'- aGGAguGCCAGAcgugcuccaccUCCAGCuCCCgcgaCCaGCCg -3'
miRNA:   3'- -CCU--CGGUCU-----------AGGUCGuGGGa---GG-CGGa -5'
31846 5' -60.2 NC_006938.1 + 19843 0.72 0.198941
Target:  5'- -uGGcCCGGuuGUCCAGCGCCUUCCGCa- -3'
miRNA:   3'- ccUC-GGUC--UAGGUCGUGGGAGGCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.