miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31846 5' -60.2 NC_006938.1 + 2973 0.72 0.220349
Target:  5'- cGAGUCAGGUCCGGCGgCCCgCCaGUCg -3'
miRNA:   3'- cCUCGGUCUAGGUCGU-GGGaGG-CGGa -5'
31846 5' -60.2 NC_006938.1 + 4902 0.7 0.282514
Target:  5'- cGGuGCCAGGUCauacuugGGCACCaUCUGCCc -3'
miRNA:   3'- -CCuCGGUCUAGg------UCGUGGgAGGCGGa -5'
31846 5' -60.2 NC_006938.1 + 6600 0.68 0.374431
Target:  5'- aGGAGCUgaaggAGAUCaCAGCGCgCUCgGCa- -3'
miRNA:   3'- -CCUCGG-----UCUAG-GUCGUGgGAGgCGga -5'
31846 5' -60.2 NC_006938.1 + 7142 0.66 0.45552
Target:  5'- cGGAGC--GGUCCgAGCGCUC-CCGCUg -3'
miRNA:   3'- -CCUCGguCUAGG-UCGUGGGaGGCGGa -5'
31846 5' -60.2 NC_006938.1 + 7301 0.71 0.243692
Target:  5'- --cGCCGGAgcUCCAG-GCCCUgCGCCUg -3'
miRNA:   3'- ccuCGGUCU--AGGUCgUGGGAgGCGGA- -5'
31846 5' -60.2 NC_006938.1 + 13312 0.66 0.474799
Target:  5'- gGGAGCCAGGacugUCAGCccGCCCgUCucggaccggacgCGCCUg -3'
miRNA:   3'- -CCUCGGUCUa---GGUCG--UGGG-AG------------GCGGA- -5'
31846 5' -60.2 NC_006938.1 + 14332 0.71 0.256116
Target:  5'- --cGCCAGAcggAGCACCCUCCgGCCg -3'
miRNA:   3'- ccuCGGUCUaggUCGUGGGAGG-CGGa -5'
31846 5' -60.2 NC_006938.1 + 19514 0.66 0.474799
Target:  5'- aGAGCCuug-CCAGUACUCggcuucacCCGCCUg -3'
miRNA:   3'- cCUCGGucuaGGUCGUGGGa-------GGCGGA- -5'
31846 5' -60.2 NC_006938.1 + 19843 0.72 0.198941
Target:  5'- -uGGcCCGGuuGUCCAGCGCCUUCCGCa- -3'
miRNA:   3'- ccUC-GGUC--UAGGUCGUGGGAGGCGga -5'
31846 5' -60.2 NC_006938.1 + 23116 0.66 0.504456
Target:  5'- aGGAguGCCAGAcgugcuccaccUCCAGCuCCCgcgaCCaGCCg -3'
miRNA:   3'- -CCU--CGGUCU-----------AGGUCGuGGGa---GG-CGGa -5'
31846 5' -60.2 NC_006938.1 + 23517 0.67 0.426497
Target:  5'- cGGGCCAGGUCgAGgaGCUCUCCggagaggGCCUu -3'
miRNA:   3'- cCUCGGUCUAGgUCg-UGGGAGG-------CGGA- -5'
31846 5' -60.2 NC_006938.1 + 23868 0.66 0.474799
Target:  5'- aGGGCCGGugcgCUgAGCgugacaccgGCCCUCCGUCUg -3'
miRNA:   3'- cCUCGGUCua--GG-UCG---------UGGGAGGCGGA- -5'
31846 5' -60.2 NC_006938.1 + 28350 0.67 0.427416
Target:  5'- cGGGGCCaAGGUgauggcuggaCAGCuguCCCUCCgGCCg -3'
miRNA:   3'- -CCUCGG-UCUAg---------GUCGu--GGGAGG-CGGa -5'
31846 5' -60.2 NC_006938.1 + 29655 0.66 0.494478
Target:  5'- uGGAGgaGGAUCUGGCucgacgagccGCCCcugCCGCCg -3'
miRNA:   3'- -CCUCggUCUAGGUCG----------UGGGa--GGCGGa -5'
31846 5' -60.2 NC_006938.1 + 29890 1.09 0.000392
Target:  5'- cGGAGCCAGAUCCAGCACCCUCCGCCUc -3'
miRNA:   3'- -CCUCGGUCUAGGUCGUGGGAGGCGGA- -5'
31846 5' -60.2 NC_006938.1 + 29971 0.69 0.333804
Target:  5'- gGGuGCUGGAUCUGGCuCCgCUCgGCCa -3'
miRNA:   3'- -CCuCGGUCUAGGUCGuGG-GAGgCGGa -5'
31846 5' -60.2 NC_006938.1 + 32220 0.68 0.374431
Target:  5'- cGAGCCGGGcaggggagcCCAGCccACCUUCCuGCCUc -3'
miRNA:   3'- cCUCGGUCUa--------GGUCG--UGGGAGG-CGGA- -5'
31846 5' -60.2 NC_006938.1 + 32937 0.66 0.504456
Target:  5'- -cGGCCAcGAUgucCCAGCuGCCCUCgaGCCa -3'
miRNA:   3'- ccUCGGU-CUA---GGUCG-UGGGAGg-CGGa -5'
31846 5' -60.2 NC_006938.1 + 34031 0.67 0.408365
Target:  5'- cGAGCCAGAgcgaCCAGCggguccaGgCCUCCggGCCg -3'
miRNA:   3'- cCUCGGUCUa---GGUCG-------UgGGAGG--CGGa -5'
31846 5' -60.2 NC_006938.1 + 34424 0.74 0.141472
Target:  5'- cGGAGCCAGA-CCAGCcgcCCCUCCuuggGCUc -3'
miRNA:   3'- -CCUCGGUCUaGGUCGu--GGGAGG----CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.