miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31855 5' -56.6 NC_006938.1 + 17923 0.66 0.682492
Target:  5'- uCGCUGUCCUUCcgCAugccauAGGCGCGGgCCGc -3'
miRNA:   3'- uGUGGUAGGAGGa-GU------UCCGUGUC-GGC- -5'
31855 5' -56.6 NC_006938.1 + 48389 0.66 0.682492
Target:  5'- gGCACUGU-CUCCacgaUCGAGGCggccACGGCCu -3'
miRNA:   3'- -UGUGGUAgGAGG----AGUUCCG----UGUCGGc -5'
31855 5' -56.6 NC_006938.1 + 61372 0.66 0.671679
Target:  5'- gACAUggagGUCUUCCUCGacGGGguCAGCCu -3'
miRNA:   3'- -UGUGg---UAGGAGGAGU--UCCguGUCGGc -5'
31855 5' -56.6 NC_006938.1 + 29784 0.66 0.671679
Target:  5'- -aGCCAUCCggCUCGgccgagGGGC-CAGCCc -3'
miRNA:   3'- ugUGGUAGGagGAGU------UCCGuGUCGGc -5'
31855 5' -56.6 NC_006938.1 + 36049 0.66 0.671679
Target:  5'- aACGCCAcCCUCUUCGAGGaggagaucUACGucGCCa -3'
miRNA:   3'- -UGUGGUaGGAGGAGUUCC--------GUGU--CGGc -5'
31855 5' -56.6 NC_006938.1 + 42682 0.66 0.66083
Target:  5'- cCACCA-CCUCCUCA-GGUggaGgGGUCGa -3'
miRNA:   3'- uGUGGUaGGAGGAGUuCCG---UgUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 61849 0.66 0.649954
Target:  5'- aACACCAUCUUCUgCAAGcGCAacaccaaguCAGCgGg -3'
miRNA:   3'- -UGUGGUAGGAGGaGUUC-CGU---------GUCGgC- -5'
31855 5' -56.6 NC_006938.1 + 9967 0.66 0.649954
Target:  5'- cGCGCCcUUCUCCU--GGGC-CAGCuCGa -3'
miRNA:   3'- -UGUGGuAGGAGGAguUCCGuGUCG-GC- -5'
31855 5' -56.6 NC_006938.1 + 20809 0.66 0.649954
Target:  5'- gACACCugCCUCCggUCGAGccccaucugucGCGCGGCCu -3'
miRNA:   3'- -UGUGGuaGGAGG--AGUUC-----------CGUGUCGGc -5'
31855 5' -56.6 NC_006938.1 + 24572 0.66 0.64342
Target:  5'- gGCGUCGUCCUCCUCcguGcagucuucgucccagAGGCGguGCCa -3'
miRNA:   3'- -UGUGGUAGGAGGAG---U---------------UCCGUguCGGc -5'
31855 5' -56.6 NC_006938.1 + 43328 0.67 0.617269
Target:  5'- cCACCGUgCUgUUCGccgcgaAGGCACuGGCCGg -3'
miRNA:   3'- uGUGGUAgGAgGAGU------UCCGUG-UCGGC- -5'
31855 5' -56.6 NC_006938.1 + 11187 0.67 0.617269
Target:  5'- cCACUcgCCUCCUgcCAAGGCgGCGauguGCCGc -3'
miRNA:   3'- uGUGGuaGGAGGA--GUUCCG-UGU----CGGC- -5'
31855 5' -56.6 NC_006938.1 + 39124 0.67 0.606387
Target:  5'- -uGCCGUCgUCCUgcaCAGcGGCAguGCCa -3'
miRNA:   3'- ugUGGUAGgAGGA---GUU-CCGUguCGGc -5'
31855 5' -56.6 NC_006938.1 + 38011 0.67 0.6053
Target:  5'- gGCAaCAUCCUgcgCCUCAAGGgACGcgagcacGCCGa -3'
miRNA:   3'- -UGUgGUAGGA---GGAGUUCCgUGU-------CGGC- -5'
31855 5' -56.6 NC_006938.1 + 33416 0.67 0.573907
Target:  5'- cCACCcgGUCUUCCUCGAcccGGCGCGcuuGUCGg -3'
miRNA:   3'- uGUGG--UAGGAGGAGUU---CCGUGU---CGGC- -5'
31855 5' -56.6 NC_006938.1 + 10399 0.67 0.573907
Target:  5'- gGCACCGcCCUCC-C-AGGCGCGGaaGu -3'
miRNA:   3'- -UGUGGUaGGAGGaGuUCCGUGUCggC- -5'
31855 5' -56.6 NC_006938.1 + 3309 0.68 0.563163
Target:  5'- -aGCCAUCUUCUgggagCAGGGCAcCGGCa- -3'
miRNA:   3'- ugUGGUAGGAGGa----GUUCCGU-GUCGgc -5'
31855 5' -56.6 NC_006938.1 + 15623 0.68 0.552473
Target:  5'- cACAuguCCAUCCUCCagGAGuacguggccaGCGCGGUCGg -3'
miRNA:   3'- -UGU---GGUAGGAGGagUUC----------CGUGUCGGC- -5'
31855 5' -56.6 NC_006938.1 + 22226 0.68 0.541846
Target:  5'- -aGCC--CCUCCggCGAGGCACcGCCa -3'
miRNA:   3'- ugUGGuaGGAGGa-GUUCCGUGuCGGc -5'
31855 5' -56.6 NC_006938.1 + 16145 0.68 0.541846
Target:  5'- -uGCCAcacCCUCCUCAAGaCGCGGCg- -3'
miRNA:   3'- ugUGGUa--GGAGGAGUUCcGUGUCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.