miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31870 5' -54.7 NC_006938.1 + 39843 1.11 0.001119
Target:  5'- gACGGACACAACCCUGACCGUCACAGCc -3'
miRNA:   3'- -UGCCUGUGUUGGGACUGGCAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 55719 0.74 0.367416
Target:  5'- gUGGACAUGGCCCUGuCCuUCGgGGCu -3'
miRNA:   3'- uGCCUGUGUUGGGACuGGcAGUgUCG- -5'
31870 5' -54.7 NC_006938.1 + 53335 0.73 0.402831
Target:  5'- uUGGcUACAACCgCUcGGCCGUCgACAGCa -3'
miRNA:   3'- uGCCuGUGUUGG-GA-CUGGCAG-UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 21729 0.72 0.421332
Target:  5'- cGCGGccCACGucGCCCUGgucaccGCCGUCcaGCAGCg -3'
miRNA:   3'- -UGCCu-GUGU--UGGGAC------UGGCAG--UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 26907 0.72 0.430772
Target:  5'- -aGGGCAUGACCCacuccaagugGACCGgCGCGGCc -3'
miRNA:   3'- ugCCUGUGUUGGGa---------CUGGCaGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 47930 0.72 0.455883
Target:  5'- gGCGGugaugACACGGgCCUGACCGgugacgcguucaaCGCGGCa -3'
miRNA:   3'- -UGCC-----UGUGUUgGGACUGGCa------------GUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 26746 0.72 0.456864
Target:  5'- cGCGGuccaGCGGCCCUcGCCGUCuggcacuugauguaGCGGCa -3'
miRNA:   3'- -UGCCug--UGUUGGGAcUGGCAG--------------UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 18360 0.71 0.520804
Target:  5'- uGCGGAgGCGGCCCagggcGGCgGUCACcucGCa -3'
miRNA:   3'- -UGCCUgUGUUGGGa----CUGgCAGUGu--CG- -5'
31870 5' -54.7 NC_006938.1 + 38585 0.7 0.541846
Target:  5'- -aGGACAC--UCC-GGCCGUCAgGGCg -3'
miRNA:   3'- ugCCUGUGuuGGGaCUGGCAGUgUCG- -5'
31870 5' -54.7 NC_006938.1 + 53096 0.7 0.541846
Target:  5'- uCGGACGC--CCUUGACa-UCACGGCg -3'
miRNA:   3'- uGCCUGUGuuGGGACUGgcAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 6097 0.7 0.573907
Target:  5'- -aGGAagagACGGCCCUGGCCGaggCAUggGGCg -3'
miRNA:   3'- ugCCUg---UGUUGGGACUGGCa--GUG--UCG- -5'
31870 5' -54.7 NC_006938.1 + 41485 0.7 0.573907
Target:  5'- uCGGGgACuuuGCCCaGGCCGccgCGCAGCc -3'
miRNA:   3'- uGCCUgUGu--UGGGaCUGGCa--GUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 34741 0.7 0.584698
Target:  5'- gGCGaGGCACuGACCgUG-CgCGUCGCGGCc -3'
miRNA:   3'- -UGC-CUGUG-UUGGgACuG-GCAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 52420 0.7 0.584698
Target:  5'- gGCGGugGCAACaaCCgGcCCGUgACAGUg -3'
miRNA:   3'- -UGCCugUGUUG--GGaCuGGCAgUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 48653 0.69 0.628164
Target:  5'- gUGGAgGCGACCaaGGCCGUC-CGGa -3'
miRNA:   3'- uGCCUgUGUUGGgaCUGGCAGuGUCg -5'
31870 5' -54.7 NC_006938.1 + 56471 0.69 0.639062
Target:  5'- uGCGGACGCcACCCgu-CgCGUUguaGCAGCu -3'
miRNA:   3'- -UGCCUGUGuUGGGacuG-GCAG---UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 32500 0.68 0.649954
Target:  5'- gGCGGAagaGCAGCuCCUcGCCGUC-CGGg -3'
miRNA:   3'- -UGCCUg--UGUUG-GGAcUGGCAGuGUCg -5'
31870 5' -54.7 NC_006938.1 + 38524 0.68 0.66083
Target:  5'- cGCGGACAUcgccGCCCUGaacGCCGcgauCGGCa -3'
miRNA:   3'- -UGCCUGUGu---UGGGAC---UGGCagu-GUCG- -5'
31870 5' -54.7 NC_006938.1 + 41360 0.68 0.66083
Target:  5'- -gGGACugGA-CCUGACUGUgAuCGGCa -3'
miRNA:   3'- ugCCUGugUUgGGACUGGCAgU-GUCG- -5'
31870 5' -54.7 NC_006938.1 + 44589 0.68 0.66083
Target:  5'- aAauGAUGCGACCCUGAUUGUCuauGCg -3'
miRNA:   3'- -UgcCUGUGUUGGGACUGGCAGuguCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.