miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31870 5' -54.7 NC_006938.1 + 3378 0.68 0.67168
Target:  5'- gGCGGGCAuCAuugacACUCUGAUCGUCcucgcgcccaACGGUg -3'
miRNA:   3'- -UGCCUGU-GU-----UGGGACUGGCAG----------UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 5507 0.67 0.714606
Target:  5'- -aGGACGCGccACCC--GCCGcUgGCAGCa -3'
miRNA:   3'- ugCCUGUGU--UGGGacUGGC-AgUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 6097 0.7 0.573907
Target:  5'- -aGGAagagACGGCCCUGGCCGaggCAUggGGCg -3'
miRNA:   3'- ugCCUg---UGUUGGGACUGGCa--GUG--UCG- -5'
31870 5' -54.7 NC_006938.1 + 6571 0.67 0.735635
Target:  5'- -aGGcCACcuCCCaGACCGUCGCuGUc -3'
miRNA:   3'- ugCCuGUGuuGGGaCUGGCAGUGuCG- -5'
31870 5' -54.7 NC_006938.1 + 6871 0.67 0.735635
Target:  5'- -aGGGCGCugcCCCUGACCuaggacggaUCAgAGCg -3'
miRNA:   3'- ugCCUGUGuu-GGGACUGGc--------AGUgUCG- -5'
31870 5' -54.7 NC_006938.1 + 6882 0.67 0.714606
Target:  5'- gUGGACAgguCGGCCUUGGCC-UCGCcGCc -3'
miRNA:   3'- uGCCUGU---GUUGGGACUGGcAGUGuCG- -5'
31870 5' -54.7 NC_006938.1 + 7270 0.66 0.780336
Target:  5'- cGCGGACGCGcucUCUUGugagcucggccauucGCCGUCucCAGCg -3'
miRNA:   3'- -UGCCUGUGUu--GGGAC---------------UGGCAGu-GUCG- -5'
31870 5' -54.7 NC_006938.1 + 9758 0.67 0.746002
Target:  5'- -gGGuguCACAGCCCUcGCCaaCGCGGCc -3'
miRNA:   3'- ugCCu--GUGUUGGGAcUGGcaGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 10540 0.66 0.766385
Target:  5'- cACGGACgaguACAugCCgcugcugacgGACgGUCcCAGCa -3'
miRNA:   3'- -UGCCUG----UGUugGGa---------CUGgCAGuGUCG- -5'
31870 5' -54.7 NC_006938.1 + 12599 0.66 0.776379
Target:  5'- gACuGGCGCAGuCCCgUGACCcguggGUCACuGGCg -3'
miRNA:   3'- -UGcCUGUGUU-GGG-ACUGG-----CAGUG-UCG- -5'
31870 5' -54.7 NC_006938.1 + 14718 0.68 0.703967
Target:  5'- cCGGACcuCGAgguuCCC-GACCGUCgGCAGCc -3'
miRNA:   3'- uGCCUGu-GUU----GGGaCUGGCAG-UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 14882 0.66 0.766385
Target:  5'- uCGGACACAgaGCUCgUGAUucgCGUCAUAGa -3'
miRNA:   3'- uGCCUGUGU--UGGG-ACUG---GCAGUGUCg -5'
31870 5' -54.7 NC_006938.1 + 17465 0.66 0.80544
Target:  5'- -aGGACACAGguCCCUccgugcggacgGGCgGUCACAucGCu -3'
miRNA:   3'- ugCCUGUGUU--GGGA-----------CUGgCAGUGU--CG- -5'
31870 5' -54.7 NC_006938.1 + 18360 0.71 0.520804
Target:  5'- uGCGGAgGCGGCCCagggcGGCgGUCACcucGCa -3'
miRNA:   3'- -UGCCUgUGUUGGGa----CUGgCAGUGu--CG- -5'
31870 5' -54.7 NC_006938.1 + 19784 0.66 0.776379
Target:  5'- gGCGGguccuGCAgAACCCUcggaggacaGACCGUguCGGUg -3'
miRNA:   3'- -UGCC-----UGUgUUGGGA---------CUGGCAguGUCG- -5'
31870 5' -54.7 NC_006938.1 + 21729 0.72 0.421332
Target:  5'- cGCGGccCACGucGCCCUGgucaccGCCGUCcaGCAGCg -3'
miRNA:   3'- -UGCCu-GUGU--UGGGAC------UGGCAG--UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 26217 0.68 0.66083
Target:  5'- cCGG-CGCGGCCCgUGGCCuGcCACAuGCa -3'
miRNA:   3'- uGCCuGUGUUGGG-ACUGG-CaGUGU-CG- -5'
31870 5' -54.7 NC_006938.1 + 26746 0.72 0.456864
Target:  5'- cGCGGuccaGCGGCCCUcGCCGUCuggcacuugauguaGCGGCa -3'
miRNA:   3'- -UGCCug--UGUUGGGAcUGGCAG--------------UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 26854 0.68 0.693259
Target:  5'- gACaGACGacgaGAUCCUGGCCGcguuUCGCGGUc -3'
miRNA:   3'- -UGcCUGUg---UUGGGACUGGC----AGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 26907 0.72 0.430772
Target:  5'- -aGGGCAUGACCCacuccaagugGACCGgCGCGGCc -3'
miRNA:   3'- ugCCUGUGUUGGGa---------CUGGCaGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.