miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31870 5' -54.7 NC_006938.1 + 5507 0.67 0.714606
Target:  5'- -aGGACGCGccACCC--GCCGcUgGCAGCa -3'
miRNA:   3'- ugCCUGUGU--UGGGacUGGC-AgUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 38524 0.68 0.66083
Target:  5'- cGCGGACAUcgccGCCCUGaacGCCGcgauCGGCa -3'
miRNA:   3'- -UGCCUGUGu---UGGGAC---UGGCagu-GUCG- -5'
31870 5' -54.7 NC_006938.1 + 3378 0.68 0.67168
Target:  5'- gGCGGGCAuCAuugacACUCUGAUCGUCcucgcgcccaACGGUg -3'
miRNA:   3'- -UGCCUGU-GU-----UGGGACUGGCAG----------UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 54613 0.68 0.67168
Target:  5'- gACGGACAa---CCgGACCuUCACAGUc -3'
miRNA:   3'- -UGCCUGUguugGGaCUGGcAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 39586 0.68 0.690034
Target:  5'- uCGGACgACGucgccgccacuggcACgCUGACCaUCACAGCc -3'
miRNA:   3'- uGCCUG-UGU--------------UGgGACUGGcAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 26854 0.68 0.693259
Target:  5'- gACaGACGacgaGAUCCUGGCCGcguuUCGCGGUc -3'
miRNA:   3'- -UGcCUGUg---UUGGGACUGGC----AGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 51210 0.68 0.693259
Target:  5'- uUGGGCu--ACuCCUGACUGUCAUuGCg -3'
miRNA:   3'- uGCCUGuguUG-GGACUGGCAGUGuCG- -5'
31870 5' -54.7 NC_006938.1 + 54099 0.68 0.693259
Target:  5'- uCGGAUACAGCCCaGACg---GCAGCu -3'
miRNA:   3'- uGCCUGUGUUGGGaCUGgcagUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 37041 0.68 0.703967
Target:  5'- -gGGACAUGACCC-GGCCccuGUCACcGUg -3'
miRNA:   3'- ugCCUGUGUUGGGaCUGG---CAGUGuCG- -5'
31870 5' -54.7 NC_006938.1 + 41360 0.68 0.66083
Target:  5'- -gGGACugGA-CCUGACUGUgAuCGGCa -3'
miRNA:   3'- ugCCUGugUUgGGACUGGCAgU-GUCG- -5'
31870 5' -54.7 NC_006938.1 + 48653 0.69 0.628164
Target:  5'- gUGGAgGCGACCaaGGCCGUC-CGGa -3'
miRNA:   3'- uGCCUgUGUUGGgaCUGGCAGuGUCg -5'
31870 5' -54.7 NC_006938.1 + 52420 0.7 0.584698
Target:  5'- gGCGGugGCAACaaCCgGcCCGUgACAGUg -3'
miRNA:   3'- -UGCCugUGUUG--GGaCuGGCAgUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 55719 0.74 0.367416
Target:  5'- gUGGACAUGGCCCUGuCCuUCGgGGCu -3'
miRNA:   3'- uGCCUGUGUUGGGACuGGcAGUgUCG- -5'
31870 5' -54.7 NC_006938.1 + 53335 0.73 0.402831
Target:  5'- uUGGcUACAACCgCUcGGCCGUCgACAGCa -3'
miRNA:   3'- uGCCuGUGUUGG-GA-CUGGCAG-UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 26907 0.72 0.430772
Target:  5'- -aGGGCAUGACCCacuccaagugGACCGgCGCGGCc -3'
miRNA:   3'- ugCCUGUGUUGGGa---------CUGGCaGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 47930 0.72 0.455883
Target:  5'- gGCGGugaugACACGGgCCUGACCGgugacgcguucaaCGCGGCa -3'
miRNA:   3'- -UGCC-----UGUGUUgGGACUGGCa------------GUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 53096 0.7 0.541846
Target:  5'- uCGGACGC--CCUUGACa-UCACGGCg -3'
miRNA:   3'- uGCCUGUGuuGGGACUGgcAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 6097 0.7 0.573907
Target:  5'- -aGGAagagACGGCCCUGGCCGaggCAUggGGCg -3'
miRNA:   3'- ugCCUg---UGUUGGGACUGGCa--GUG--UCG- -5'
31870 5' -54.7 NC_006938.1 + 41485 0.7 0.573907
Target:  5'- uCGGGgACuuuGCCCaGGCCGccgCGCAGCc -3'
miRNA:   3'- uGCCUgUGu--UGGGaCUGGCa--GUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 34741 0.7 0.584698
Target:  5'- gGCGaGGCACuGACCgUG-CgCGUCGCGGCc -3'
miRNA:   3'- -UGC-CUGUG-UUGGgACuG-GCAGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.