Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 40468 | 1.09 | 0.000938 |
Target: 5'- gACGACACUCCUCCGACGGACGACCAGg -3' miRNA: 3'- -UGCUGUGAGGAGGCUGCCUGCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 43040 | 0.74 | 0.243455 |
Target: 5'- aACGugGuCUCagucccguuugaCUCCGACGaGACGACCGGg -3' miRNA: 3'- -UGCugU-GAG------------GAGGCUGC-CUGCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 30931 | 0.72 | 0.333853 |
Target: 5'- gGCGuACACUCaCUCCGuCuGGCGGCCAa -3' miRNA: 3'- -UGC-UGUGAG-GAGGCuGcCUGCUGGUc -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 40501 | 0.72 | 0.341742 |
Target: 5'- cCGAacccCGCuUCCUCCGAucCGGACGACgAGg -3' miRNA: 3'- uGCU----GUG-AGGAGGCU--GCCUGCUGgUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 18167 | 0.72 | 0.341742 |
Target: 5'- cCGACGCUCCUUCGucgcuCGGAucuCGACCu- -3' miRNA: 3'- uGCUGUGAGGAGGCu----GCCU---GCUGGuc -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 21051 | 0.71 | 0.391859 |
Target: 5'- -aGACGCgCCUCCGuuucuGCGaGCGACCAGu -3' miRNA: 3'- ugCUGUGaGGAGGC-----UGCcUGCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 35379 | 0.71 | 0.409596 |
Target: 5'- gAUGGgAUUCCacgaugCCGACuGACGACCAGa -3' miRNA: 3'- -UGCUgUGAGGa-----GGCUGcCUGCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 17466 | 0.7 | 0.437116 |
Target: 5'- -gGACACaggucCCUCCGuGCGGACGGgCGGu -3' miRNA: 3'- ugCUGUGa----GGAGGC-UGCCUGCUgGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 18499 | 0.69 | 0.495161 |
Target: 5'- gGCGGCGCaUCUaCCGGcCGGACGACg-- -3' miRNA: 3'- -UGCUGUG-AGGaGGCU-GCCUGCUGguc -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 21487 | 0.69 | 0.515285 |
Target: 5'- cACG-C-CUCCUCCGAgGGGCuugucacccgGACCGGc -3' miRNA: 3'- -UGCuGuGAGGAGGCUgCCUG----------CUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 58088 | 0.69 | 0.515285 |
Target: 5'- gACGACGCcCUUCCaaACGGACGAgaccaCCAGc -3' miRNA: 3'- -UGCUGUGaGGAGGc-UGCCUGCU-----GGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 24501 | 0.68 | 0.556456 |
Target: 5'- gACGACGC-CUUCaaGGCGGAgGugCAGa -3' miRNA: 3'- -UGCUGUGaGGAGg-CUGCCUgCugGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 46959 | 0.68 | 0.587946 |
Target: 5'- -gGACACUCCgccgaccgCCGACGaGugGGCg-- -3' miRNA: 3'- ugCUGUGAGGa-------GGCUGC-CugCUGguc -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 49830 | 0.68 | 0.587946 |
Target: 5'- gUGGCAUUCCgcauagugUUgGAUGGAgGACCAGg -3' miRNA: 3'- uGCUGUGAGG--------AGgCUGCCUgCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 38584 | 0.67 | 0.609125 |
Target: 5'- -gGACACUCCggCCGucaGGGCGAUgCGGu -3' miRNA: 3'- ugCUGUGAGGa-GGCug-CCUGCUG-GUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 55590 | 0.67 | 0.630377 |
Target: 5'- gGCGugGCcCCUCCGugGucgucucuUGGCCGGg -3' miRNA: 3'- -UGCugUGaGGAGGCugCcu------GCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 4673 | 0.67 | 0.64101 |
Target: 5'- -gGACAUgcucgCCUCUGAcaCGGugGACgAGa -3' miRNA: 3'- ugCUGUGa----GGAGGCU--GCCugCUGgUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 122 | 0.67 | 0.64101 |
Target: 5'- gUGGCACUCUccgcgUCGACGGugGucgagccaccGCCAGu -3' miRNA: 3'- uGCUGUGAGGa----GGCUGCCugC----------UGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 18182 | 0.67 | 0.64101 |
Target: 5'- -gGACGC-CCUCCGcGCGGcCGgacACCAGc -3' miRNA: 3'- ugCUGUGaGGAGGC-UGCCuGC---UGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 28485 | 0.66 | 0.649511 |
Target: 5'- cCGcCACUCCggugCCGGguugaccguguaGGGCGGCCGGa -3' miRNA: 3'- uGCuGUGAGGa---GGCUg-----------CCUGCUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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