Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 122 | 0.67 | 0.64101 |
Target: 5'- gUGGCACUCUccgcgUCGACGGugGucgagccaccGCCAGu -3' miRNA: 3'- uGCUGUGAGGa----GGCUGCCugC----------UGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 4673 | 0.67 | 0.64101 |
Target: 5'- -gGACAUgcucgCCUCUGAcaCGGugGACgAGa -3' miRNA: 3'- ugCUGUGa----GGAGGCU--GCCugCUGgUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 10052 | 0.66 | 0.708479 |
Target: 5'- aGCGGCcgauguccuccuggaGCUCCUCUggaaggaccuGGCGGACGuauUCAGa -3' miRNA: 3'- -UGCUG---------------UGAGGAGG----------CUGCCUGCu--GGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 10380 | 0.66 | 0.683373 |
Target: 5'- uGCuACGCUCCgaUGAC-GACGACCAGu -3' miRNA: 3'- -UGcUGUGAGGagGCUGcCUGCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 14368 | 0.66 | 0.704318 |
Target: 5'- -aGGCGCUCUgccCCGGCGuuGugGACCu- -3' miRNA: 3'- ugCUGUGAGGa--GGCUGC--CugCUGGuc -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 14592 | 0.66 | 0.698058 |
Target: 5'- gACG-CACUCCuccucggagaaggucUCCGACaGGAucaaucUGACCAGc -3' miRNA: 3'- -UGCuGUGAGG---------------AGGCUG-CCU------GCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 17466 | 0.7 | 0.437116 |
Target: 5'- -gGACACaggucCCUCCGuGCGGACGGgCGGu -3' miRNA: 3'- ugCUGUGa----GGAGGC-UGCCUGCUgGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 18167 | 0.72 | 0.341742 |
Target: 5'- cCGACGCUCCUUCGucgcuCGGAucuCGACCu- -3' miRNA: 3'- uGCUGUGAGGAGGCu----GCCU---GCUGGuc -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 18182 | 0.67 | 0.64101 |
Target: 5'- -gGACGC-CCUCCGcGCGGcCGgacACCAGc -3' miRNA: 3'- ugCUGUGaGGAGGC-UGCCuGC---UGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 18499 | 0.69 | 0.495161 |
Target: 5'- gGCGGCGCaUCUaCCGGcCGGACGACg-- -3' miRNA: 3'- -UGCUGUG-AGGaGGCU-GCCUGCUGguc -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 20058 | 0.66 | 0.704318 |
Target: 5'- cACGuACAUguaCUUCGugGGACGGuccuCCAGg -3' miRNA: 3'- -UGC-UGUGag-GAGGCugCCUGCU----GGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 21051 | 0.71 | 0.391859 |
Target: 5'- -aGACGCgCCUCCGuuucuGCGaGCGACCAGu -3' miRNA: 3'- ugCUGUGaGGAGGC-----UGCcUGCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 21487 | 0.69 | 0.515285 |
Target: 5'- cACG-C-CUCCUCCGAgGGGCuugucacccgGACCGGc -3' miRNA: 3'- -UGCuGuGAGGAGGCUgCCUG----------CUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 24501 | 0.68 | 0.556456 |
Target: 5'- gACGACGC-CUUCaaGGCGGAgGugCAGa -3' miRNA: 3'- -UGCUGUGaGGAGg-CUGCCUgCugGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 26163 | 0.66 | 0.683373 |
Target: 5'- -gGGgACUCCUCCG-C--GCGACCAGc -3' miRNA: 3'- ugCUgUGAGGAGGCuGccUGCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 28485 | 0.66 | 0.649511 |
Target: 5'- cCGcCACUCCggugCCGGguugaccguguaGGGCGGCCGGa -3' miRNA: 3'- uGCuGUGAGGa---GGCUg-----------CCUGCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 30931 | 0.72 | 0.333853 |
Target: 5'- gGCGuACACUCaCUCCGuCuGGCGGCCAa -3' miRNA: 3'- -UGC-UGUGAG-GAGGCuGcCUGCUGGUc -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 35379 | 0.71 | 0.409596 |
Target: 5'- gAUGGgAUUCCacgaugCCGACuGACGACCAGa -3' miRNA: 3'- -UGCUgUGAGGa-----GGCUGcCUGCUGGUC- -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 38032 | 0.66 | 0.693873 |
Target: 5'- -gGACGCgagCacgCCGAgCGGAUGGCCAa -3' miRNA: 3'- ugCUGUGa--Gga-GGCU-GCCUGCUGGUc -5' |
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31873 | 5' | -57.2 | NC_006938.1 | + | 38584 | 0.67 | 0.609125 |
Target: 5'- -gGACACUCCggCCGucaGGGCGAUgCGGu -3' miRNA: 3'- ugCUGUGAGGa-GGCug-CCUGCUG-GUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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