Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 40468 | 1.09 | 0.000938 |
Target: 5'- gACGACACUCCUCCGACGGACGACCAGg -3' miRNA: 3'- -UGCUGUGAGGAGGCUGCCUGCUGGUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 38032 | 0.66 | 0.693873 |
Target: 5'- -gGACGCgagCacgCCGAgCGGAUGGCCAa -3' miRNA: 3'- ugCUGUGa--Gga-GGCU-GCCUGCUGGUc -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 61721 | 0.66 | 0.683373 |
Target: 5'- cCGGCuccCUCCUCCugGACGGggacgGCGACUAc -3' miRNA: 3'- uGCUGu--GAGGAGG--CUGCC-----UGCUGGUc -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 10380 | 0.66 | 0.683373 |
Target: 5'- uGCuACGCUCCgaUGAC-GACGACCAGu -3' miRNA: 3'- -UGcUGUGAGGagGCUGcCUGCUGGUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 56296 | 0.66 | 0.662244 |
Target: 5'- gACGGCGUUCUUCgGcACGGGCGGCUu- -3' miRNA: 3'- -UGCUGUGAGGAGgC-UGCCUGCUGGuc -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 52300 | 0.66 | 0.662244 |
Target: 5'- gGCGGCucgaUCCUCau-CGG-CGGCCAGg -3' miRNA: 3'- -UGCUGug--AGGAGgcuGCCuGCUGGUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 4673 | 0.67 | 0.64101 |
Target: 5'- -gGACAUgcucgCCUCUGAcaCGGugGACgAGa -3' miRNA: 3'- ugCUGUGa----GGAGGCU--GCCugCUGgUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 18182 | 0.67 | 0.64101 |
Target: 5'- -gGACGC-CCUCCGcGCGGcCGgacACCAGc -3' miRNA: 3'- ugCUGUGaGGAGGC-UGCCuGC---UGGUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 46959 | 0.68 | 0.587946 |
Target: 5'- -gGACACUCCgccgaccgCCGACGaGugGGCg-- -3' miRNA: 3'- ugCUGUGAGGa-------GGCUGC-CugCUGguc -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 24501 | 0.68 | 0.556456 |
Target: 5'- gACGACGC-CUUCaaGGCGGAgGugCAGa -3' miRNA: 3'- -UGCUGUGaGGAGg-CUGCCUgCugGUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 43040 | 0.74 | 0.243455 |
Target: 5'- aACGugGuCUCagucccguuugaCUCCGACGaGACGACCGGg -3' miRNA: 3'- -UGCugU-GAG------------GAGGCUGC-CUGCUGGUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 30931 | 0.72 | 0.333853 |
Target: 5'- gGCGuACACUCaCUCCGuCuGGCGGCCAa -3' miRNA: 3'- -UGC-UGUGAG-GAGGCuGcCUGCUGGUc -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 40501 | 0.72 | 0.341742 |
Target: 5'- cCGAacccCGCuUCCUCCGAucCGGACGACgAGg -3' miRNA: 3'- uGCU----GUG-AGGAGGCU--GCCUGCUGgUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 35379 | 0.71 | 0.409596 |
Target: 5'- gAUGGgAUUCCacgaugCCGACuGACGACCAGa -3' miRNA: 3'- -UGCUgUGAGGa-----GGCUGcCUGCUGGUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 17466 | 0.7 | 0.437116 |
Target: 5'- -gGACACaggucCCUCCGuGCGGACGGgCGGu -3' miRNA: 3'- ugCUGUGa----GGAGGC-UGCCUGCUgGUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 18499 | 0.69 | 0.495161 |
Target: 5'- gGCGGCGCaUCUaCCGGcCGGACGACg-- -3' miRNA: 3'- -UGCUGUG-AGGaGGCU-GCCUGCUGguc -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 58088 | 0.69 | 0.515285 |
Target: 5'- gACGACGCcCUUCCaaACGGACGAgaccaCCAGc -3' miRNA: 3'- -UGCUGUGaGGAGGc-UGCCUGCU-----GGUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 18167 | 0.72 | 0.341742 |
Target: 5'- cCGACGCUCCUUCGucgcuCGGAucuCGACCu- -3' miRNA: 3'- uGCUGUGAGGAGGCu----GCCU---GCUGGuc -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 20058 | 0.66 | 0.704318 |
Target: 5'- cACGuACAUguaCUUCGugGGACGGuccuCCAGg -3' miRNA: 3'- -UGC-UGUGag-GAGGCugCCUGCU----GGUC- -5' |
|||||||
31873 | 5' | -57.2 | NC_006938.1 | + | 14368 | 0.66 | 0.704318 |
Target: 5'- -aGGCGCUCUgccCCGGCGuuGugGACCu- -3' miRNA: 3'- ugCUGUGAGGa--GGCUGC--CugCUGGuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home