Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31879 | 5' | -60.8 | NC_006938.1 | + | 42529 | 1.08 | 0.000488 |
Target: 5'- aUCGACGCCACCGCCCCGACCACUGUGu -3' miRNA: 3'- -AGCUGCGGUGGCGGGGCUGGUGACAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 38021 | 0.79 | 0.067795 |
Target: 5'- cCGACGCCuccACCGCCCUGGCCACc--- -3' miRNA: 3'- aGCUGCGG---UGGCGGGGCUGGUGacac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 39590 | 0.78 | 0.084335 |
Target: 5'- aCGACGUCGCCGCCaCUGGCaCGCUGa- -3' miRNA: 3'- aGCUGCGGUGGCGG-GGCUG-GUGACac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 61678 | 0.78 | 0.084335 |
Target: 5'- uUCGGCGgCGCgGCCCgGACCuCUGUGa -3' miRNA: 3'- -AGCUGCgGUGgCGGGgCUGGuGACAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 15733 | 0.76 | 0.107524 |
Target: 5'- cUCGACGCCgACCGCgCUGGCCACg--- -3' miRNA: 3'- -AGCUGCGG-UGGCGgGGCUGGUGacac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 52497 | 0.75 | 0.122876 |
Target: 5'- gUUGuuGCCACCGCCCUGGCC-CcGUGg -3' miRNA: 3'- -AGCugCGGUGGCGGGGCUGGuGaCAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 11964 | 0.74 | 0.143976 |
Target: 5'- cCG-UGCCACCGCCUCaGCCGCgUGUGg -3' miRNA: 3'- aGCuGCGGUGGCGGGGcUGGUG-ACAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 37517 | 0.72 | 0.196329 |
Target: 5'- cUCGAgGCCGCCGCCgCUGGCaaGCUGg- -3' miRNA: 3'- -AGCUgCGGUGGCGG-GGCUGg-UGACac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 1723 | 0.72 | 0.206527 |
Target: 5'- aCGACGCCAUggacaGCUCCGGCCGgUGg- -3' miRNA: 3'- aGCUGCGGUGg----CGGGGCUGGUgACac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 29670 | 0.71 | 0.228299 |
Target: 5'- cUCGACGa-GCCGCCCCuGCCGCcGUa -3' miRNA: 3'- -AGCUGCggUGGCGGGGcUGGUGaCAc -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 59423 | 0.71 | 0.234037 |
Target: 5'- gUGGCGCCGCCGgaCCCGGCCgACUu-- -3' miRNA: 3'- aGCUGCGGUGGCg-GGGCUGG-UGAcac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 42074 | 0.71 | 0.258209 |
Target: 5'- uUCGGCGCUGCCauccuGCCCCuGCCACUc-- -3' miRNA: 3'- -AGCUGCGGUGG-----CGGGGcUGGUGAcac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 46407 | 0.7 | 0.271042 |
Target: 5'- -gGACGUgACCGCCCUG-CCACUuggaucgaucGUGg -3' miRNA: 3'- agCUGCGgUGGCGGGGCuGGUGA----------CAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 24629 | 0.7 | 0.277649 |
Target: 5'- cCGGCGCUA-CGaCCCCGGCCACg--- -3' miRNA: 3'- aGCUGCGGUgGC-GGGGCUGGUGacac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 10728 | 0.7 | 0.277649 |
Target: 5'- gCGugGUCAUCGCCCCGuACCAg---- -3' miRNA: 3'- aGCugCGGUGGCGGGGC-UGGUgacac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 51723 | 0.7 | 0.277649 |
Target: 5'- gUUGAccuCGCCgACCGCCCCGuCCACa--- -3' miRNA: 3'- -AGCU---GCGG-UGGCGGGGCuGGUGacac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 98 | 0.7 | 0.284384 |
Target: 5'- gUCGA-GCCACCGCCa-G-UCACUGUGa -3' miRNA: 3'- -AGCUgCGGUGGCGGggCuGGUGACAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 5362 | 0.7 | 0.298239 |
Target: 5'- gUGugGUCAacUCGCCCCucGGCCACUGg- -3' miRNA: 3'- aGCugCGGU--GGCGGGG--CUGGUGACac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 15081 | 0.69 | 0.30536 |
Target: 5'- aCGACGCC-CUGCCCCGAggucUCGCg--- -3' miRNA: 3'- aGCUGCGGuGGCGGGGCU----GGUGacac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 39124 | 0.69 | 0.335143 |
Target: 5'- aUCGGCuCCGCCaagGUCCCGACCGagGUGg -3' miRNA: 3'- -AGCUGcGGUGG---CGGGGCUGGUgaCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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