Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31879 | 5' | -60.8 | NC_006938.1 | + | 51244 | 0.66 | 0.493621 |
Target: 5'- cUCGGCGCuCAUCGCCUucagCGACCAgCUcaaccaggccgGUGg -3' miRNA: 3'- -AGCUGCG-GUGGCGGG----GCUGGU-GA-----------CAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 39124 | 0.69 | 0.335143 |
Target: 5'- aUCGGCuCCGCCaagGUCCCGACCGagGUGg -3' miRNA: 3'- -AGCUGcGGUGG---CGGGGCUGGUgaCAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 55795 | 0.68 | 0.350812 |
Target: 5'- aCGACGCCACCaagGCCCC-ACCcucucgcCUGUc -3' miRNA: 3'- aGCUGCGGUGG---CGGGGcUGGu------GACAc -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 62561 | 0.68 | 0.378624 |
Target: 5'- gUCGGCgGCCgaggaguuccgucucAUCGUCCCGACCAgUGg- -3' miRNA: 3'- -AGCUG-CGG---------------UGGCGGGGCUGGUgACac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 38709 | 0.67 | 0.436667 |
Target: 5'- cUCGGCGUCuccagGCCGCCUucaucgCGACCAUgcaggGUGu -3' miRNA: 3'- -AGCUGCGG-----UGGCGGG------GCUGGUGa----CAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 34897 | 0.66 | 0.474238 |
Target: 5'- gUCGACaaCACguuCGCCCCGGCCGacCUGg- -3' miRNA: 3'- -AGCUGcgGUG---GCGGGGCUGGU--GACac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 58491 | 0.66 | 0.483883 |
Target: 5'- cUGAUGCCAUacgcaccaGCCCagcaGACCGCcGUGc -3' miRNA: 3'- aGCUGCGGUGg-------CGGGg---CUGGUGaCAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 38457 | 0.66 | 0.493621 |
Target: 5'- aCGACGaagagaacguguCCACCGaCUCGAUCGCUGa- -3' miRNA: 3'- aGCUGC------------GGUGGCgGGGCUGGUGACac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 18475 | 0.66 | 0.493621 |
Target: 5'- gCGACGaggaCAUCGCCCCGAU--CUGg- -3' miRNA: 3'- aGCUGCg---GUGGCGGGGCUGguGACac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 15081 | 0.69 | 0.30536 |
Target: 5'- aCGACGCC-CUGCCCCGAggucUCGCg--- -3' miRNA: 3'- aGCUGCGGuGGCGGGGCU----GGUGacac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 24629 | 0.7 | 0.277649 |
Target: 5'- cCGGCGCUA-CGaCCCCGGCCACg--- -3' miRNA: 3'- aGCUGCGGUgGC-GGGGCUGGUGacac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 10728 | 0.7 | 0.277649 |
Target: 5'- gCGugGUCAUCGCCCCGuACCAg---- -3' miRNA: 3'- aGCugCGGUGGCGGGGC-UGGUgacac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 39590 | 0.78 | 0.084335 |
Target: 5'- aCGACGUCGCCGCCaCUGGCaCGCUGa- -3' miRNA: 3'- aGCUGCGGUGGCGG-GGCUG-GUGACac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 61678 | 0.78 | 0.084335 |
Target: 5'- uUCGGCGgCGCgGCCCgGACCuCUGUGa -3' miRNA: 3'- -AGCUGCgGUGgCGGGgCUGGuGACAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 11964 | 0.74 | 0.143976 |
Target: 5'- cCG-UGCCACCGCCUCaGCCGCgUGUGg -3' miRNA: 3'- aGCuGCGGUGGCGGGGcUGGUG-ACAC- -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 37517 | 0.72 | 0.196329 |
Target: 5'- cUCGAgGCCGCCGCCgCUGGCaaGCUGg- -3' miRNA: 3'- -AGCUgCGGUGGCGG-GGCUGg-UGACac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 1723 | 0.72 | 0.206527 |
Target: 5'- aCGACGCCAUggacaGCUCCGGCCGgUGg- -3' miRNA: 3'- aGCUGCGGUGg----CGGGGCUGGUgACac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 29670 | 0.71 | 0.228299 |
Target: 5'- cUCGACGa-GCCGCCCCuGCCGCcGUa -3' miRNA: 3'- -AGCUGCggUGGCGGGGcUGGUGaCAc -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 59423 | 0.71 | 0.234037 |
Target: 5'- gUGGCGCCGCCGgaCCCGGCCgACUu-- -3' miRNA: 3'- aGCUGCGGUGGCg-GGGCUGG-UGAcac -5' |
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31879 | 5' | -60.8 | NC_006938.1 | + | 42074 | 0.71 | 0.258209 |
Target: 5'- uUCGGCGCUGCCauccuGCCCCuGCCACUc-- -3' miRNA: 3'- -AGCUGCGGUGG-----CGGGGcUGGUGAcac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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