miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31879 5' -60.8 NC_006938.1 + 98 0.7 0.284384
Target:  5'- gUCGA-GCCACCGCCa-G-UCACUGUGa -3'
miRNA:   3'- -AGCUgCGGUGGCGGggCuGGUGACAC- -5'
31879 5' -60.8 NC_006938.1 + 1723 0.72 0.206527
Target:  5'- aCGACGCCAUggacaGCUCCGGCCGgUGg- -3'
miRNA:   3'- aGCUGCGGUGg----CGGGGCUGGUgACac -5'
31879 5' -60.8 NC_006938.1 + 3862 0.66 0.455243
Target:  5'- gCGAugccacccuUGCCACCGCgCCCGACgaGCgucuugGUGa -3'
miRNA:   3'- aGCU---------GCGGUGGCG-GGGCUGg-UGa-----CAC- -5'
31879 5' -60.8 NC_006938.1 + 4256 0.69 0.342913
Target:  5'- gUCGGaGCCGuCCGCCCgGACCAUg--- -3'
miRNA:   3'- -AGCUgCGGU-GGCGGGgCUGGUGacac -5'
31879 5' -60.8 NC_006938.1 + 5362 0.7 0.298239
Target:  5'- gUGugGUCAacUCGCCCCucGGCCACUGg- -3'
miRNA:   3'- aGCugCGGU--GGCGGGG--CUGGUGACac -5'
31879 5' -60.8 NC_006938.1 + 9121 0.67 0.445901
Target:  5'- cCGAUGCCACCuCCCau-CCGCaugGUGg -3'
miRNA:   3'- aGCUGCGGUGGcGGGgcuGGUGa--CAC- -5'
31879 5' -60.8 NC_006938.1 + 10728 0.7 0.277649
Target:  5'- gCGugGUCAUCGCCCCGuACCAg---- -3'
miRNA:   3'- aGCugCGGUGGCGGGGC-UGGUgacac -5'
31879 5' -60.8 NC_006938.1 + 11964 0.74 0.143976
Target:  5'- cCG-UGCCACCGCCUCaGCCGCgUGUGg -3'
miRNA:   3'- aGCuGCGGUGGCGGGGcUGGUG-ACAC- -5'
31879 5' -60.8 NC_006938.1 + 15015 0.68 0.366995
Target:  5'- aUGGCGCCACC--UCCGGCCACUu-- -3'
miRNA:   3'- aGCUGCGGUGGcgGGGCUGGUGAcac -5'
31879 5' -60.8 NC_006938.1 + 15081 0.69 0.30536
Target:  5'- aCGACGCC-CUGCCCCGAggucUCGCg--- -3'
miRNA:   3'- aGCUGCGGuGGCGGGGCU----GGUGacac -5'
31879 5' -60.8 NC_006938.1 + 15733 0.76 0.107524
Target:  5'- cUCGACGCCgACCGCgCUGGCCACg--- -3'
miRNA:   3'- -AGCUGCGG-UGGCGgGGCUGGUGacac -5'
31879 5' -60.8 NC_006938.1 + 16030 0.67 0.436667
Target:  5'- aUCGG-GCC-UCGCCCCuGCC-CUGUGa -3'
miRNA:   3'- -AGCUgCGGuGGCGGGGcUGGuGACAC- -5'
31879 5' -60.8 NC_006938.1 + 16356 0.66 0.455243
Target:  5'- cCGAC-CCAgCGCUCCGgcacgucguGCCACUGg- -3'
miRNA:   3'- aGCUGcGGUgGCGGGGC---------UGGUGACac -5'
31879 5' -60.8 NC_006938.1 + 18475 0.66 0.493621
Target:  5'- gCGACGaggaCAUCGCCCCGAU--CUGg- -3'
miRNA:   3'- aGCUGCg---GUGGCGGGGCUGguGACac -5'
31879 5' -60.8 NC_006938.1 + 21638 0.66 0.493621
Target:  5'- cUUGGCGa-GCCGCUccguCCGACC-CUGUGu -3'
miRNA:   3'- -AGCUGCggUGGCGG----GGCUGGuGACAC- -5'
31879 5' -60.8 NC_006938.1 + 24629 0.7 0.277649
Target:  5'- cCGGCGCUA-CGaCCCCGGCCACg--- -3'
miRNA:   3'- aGCUGCGGUgGC-GGGGCUGGUGacac -5'
31879 5' -60.8 NC_006938.1 + 29670 0.71 0.228299
Target:  5'- cUCGACGa-GCCGCCCCuGCCGCcGUa -3'
miRNA:   3'- -AGCUGCggUGGCGGGGcUGGUGaCAc -5'
31879 5' -60.8 NC_006938.1 + 34897 0.66 0.474238
Target:  5'- gUCGACaaCACguuCGCCCCGGCCGacCUGg- -3'
miRNA:   3'- -AGCUGcgGUG---GCGGGGCUGGU--GACac -5'
31879 5' -60.8 NC_006938.1 + 37517 0.72 0.196329
Target:  5'- cUCGAgGCCGCCGCCgCUGGCaaGCUGg- -3'
miRNA:   3'- -AGCUgCGGUGGCGG-GGCUGg-UGACac -5'
31879 5' -60.8 NC_006938.1 + 37993 0.66 0.493621
Target:  5'- cCG-CuCCGCCGCCCUGAgacgcgggccaCCAgUGUGg -3'
miRNA:   3'- aGCuGcGGUGGCGGGGCU-----------GGUgACAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.