miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31882 3' -56.8 NC_006938.1 + 46554 1.12 0.000492
Target:  5'- aGUGACUCCACGAAGCCCUGGAGAGGCg -3'
miRNA:   3'- -CACUGAGGUGCUUCGGGACCUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 16428 0.74 0.247191
Target:  5'- --uGCUCCAUGGAGCCCaaGAGAauGGCg -3'
miRNA:   3'- cacUGAGGUGCUUCGGGacCUCU--CCG- -5'
31882 3' -56.8 NC_006938.1 + 40923 0.74 0.247191
Target:  5'- cUGACUCCAgGAAcGCCUUGGcucGGGCg -3'
miRNA:   3'- cACUGAGGUgCUU-CGGGACCuc-UCCG- -5'
31882 3' -56.8 NC_006938.1 + 62378 0.73 0.280334
Target:  5'- -cGugUCCAccugcgcguCGAAGCCCaGGAGcaGGGCa -3'
miRNA:   3'- caCugAGGU---------GCUUCGGGaCCUC--UCCG- -5'
31882 3' -56.8 NC_006938.1 + 19948 0.73 0.301864
Target:  5'- -gGACUCCAgGGAGgCCUGGAGGa-- -3'
miRNA:   3'- caCUGAGGUgCUUCgGGACCUCUccg -5'
31882 3' -56.8 NC_006938.1 + 51766 0.72 0.348682
Target:  5'- uUGACU-CGCGGAGCCCa-GAGAGGg -3'
miRNA:   3'- cACUGAgGUGCUUCGGGacCUCUCCg -5'
31882 3' -56.8 NC_006938.1 + 10320 0.71 0.355303
Target:  5'- cUGACcgcgcugUCCACGAAGCCCUGGGcgacuguGAGa- -3'
miRNA:   3'- cACUG-------AGGUGCUUCGGGACCU-------CUCcg -5'
31882 3' -56.8 NC_006938.1 + 55077 0.71 0.356972
Target:  5'- gGUGcCUCCAgGGAacGCCCUcccaGGAGAGGg -3'
miRNA:   3'- -CACuGAGGUgCUU--CGGGA----CCUCUCCg -5'
31882 3' -56.8 NC_006938.1 + 16351 0.71 0.365398
Target:  5'- -gGGCUCCAUGGAGCaucGGAuaGAGGCc -3'
miRNA:   3'- caCUGAGGUGCUUCGggaCCU--CUCCG- -5'
31882 3' -56.8 NC_006938.1 + 15125 0.71 0.38266
Target:  5'- cUGACU-CGCGAGaCCCggaacGGAGGGGCg -3'
miRNA:   3'- cACUGAgGUGCUUcGGGa----CCUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 34013 0.7 0.418769
Target:  5'- aGUGACUCguugcgcaGCGuGGCCUUcucgcGGAGGGGCu -3'
miRNA:   3'- -CACUGAGg-------UGCuUCGGGA-----CCUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 26753 0.7 0.437583
Target:  5'- -cGGCUUCAUG-AGCgUCUGaGGGAGGCa -3'
miRNA:   3'- caCUGAGGUGCuUCG-GGAC-CUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 34595 0.69 0.476609
Target:  5'- aGUGugUCCu---GGCCCUGGuugaAGAGGg -3'
miRNA:   3'- -CACugAGGugcuUCGGGACC----UCUCCg -5'
31882 3' -56.8 NC_006938.1 + 20118 0.69 0.486635
Target:  5'- cGUGGuCUCCugGGccuccgacaaccAGCgCUGGGacGAGGCg -3'
miRNA:   3'- -CACU-GAGGugCU------------UCGgGACCU--CUCCG- -5'
31882 3' -56.8 NC_006938.1 + 53884 0.69 0.506978
Target:  5'- aGUGGCUCCaACGGAGCUUcGGucguuGGCa -3'
miRNA:   3'- -CACUGAGG-UGCUUCGGGaCCucu--CCG- -5'
31882 3' -56.8 NC_006938.1 + 9871 0.68 0.517285
Target:  5'- -aGGcCUCCGuCGAgcuGGCCCaGGAGAagGGCg -3'
miRNA:   3'- caCU-GAGGU-GCU---UCGGGaCCUCU--CCG- -5'
31882 3' -56.8 NC_006938.1 + 12995 0.68 0.517285
Target:  5'- -gGugUCCuuguCG-AGCCCaaggaggcgGGAGAGGCc -3'
miRNA:   3'- caCugAGGu---GCuUCGGGa--------CCUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 31644 0.68 0.548677
Target:  5'- -cGACgugugCCACGGAGCCagUGGuGGcuGGCa -3'
miRNA:   3'- caCUGa----GGUGCUUCGGg-ACCuCU--CCG- -5'
31882 3' -56.8 NC_006938.1 + 49704 0.67 0.590311
Target:  5'- gGUGAuCUCgGCGAA-CCUUGGAGGcauccucGGCg -3'
miRNA:   3'- -CACU-GAGgUGCUUcGGGACCUCU-------CCG- -5'
31882 3' -56.8 NC_006938.1 + 44007 0.67 0.590311
Target:  5'- --cGCUCCGCGAuguucaucggucuGGCCUcggcgggaaUGGAGGuGGCa -3'
miRNA:   3'- cacUGAGGUGCU-------------UCGGG---------ACCUCU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.