Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31882 | 3' | -56.8 | NC_006938.1 | + | 1226 | 0.67 | 0.602167 |
Target: 5'- -gGACUUCugGccGCCCUGuGGAucGGCu -3' miRNA: 3'- caCUGAGGugCuuCGGGACcUCU--CCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 5982 | 0.66 | 0.645449 |
Target: 5'- cUGACUCCAccuugcgcuCGAacAGUCC-GGGGaAGGCu -3' miRNA: 3'- cACUGAGGU---------GCU--UCGGGaCCUC-UCCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 7011 | 0.67 | 0.591387 |
Target: 5'- uUGaACUUgGgGAacGGCCCcggcUGGGGAGGCa -3' miRNA: 3'- cAC-UGAGgUgCU--UCGGG----ACCUCUCCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 7124 | 0.66 | 0.65302 |
Target: 5'- --aGCUCCACGAgcuccguccggagcGGUCCgagcgcucccgcUGGAGAcGGCg -3' miRNA: 3'- cacUGAGGUGCU--------------UCGGG------------ACCUCU-CCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 9871 | 0.68 | 0.517285 |
Target: 5'- -aGGcCUCCGuCGAgcuGGCCCaGGAGAagGGCg -3' miRNA: 3'- caCU-GAGGU-GCU---UCGGGaCCUCU--CCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 10320 | 0.71 | 0.355303 |
Target: 5'- cUGACcgcgcugUCCACGAAGCCCUGGGcgacuguGAGa- -3' miRNA: 3'- cACUG-------AGGUGCUUCGGGACCU-------CUCcg -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 12995 | 0.68 | 0.517285 |
Target: 5'- -gGugUCCuuguCG-AGCCCaaggaggcgGGAGAGGCc -3' miRNA: 3'- caCugAGGu---GCuUCGGGa--------CCUCUCCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 15125 | 0.71 | 0.38266 |
Target: 5'- cUGACU-CGCGAGaCCCggaacGGAGGGGCg -3' miRNA: 3'- cACUGAgGUGCUUcGGGa----CCUCUCCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 16351 | 0.71 | 0.365398 |
Target: 5'- -gGGCUCCAUGGAGCaucGGAuaGAGGCc -3' miRNA: 3'- caCUGAGGUGCUUCGggaCCU--CUCCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 16428 | 0.74 | 0.247191 |
Target: 5'- --uGCUCCAUGGAGCCCaaGAGAauGGCg -3' miRNA: 3'- cacUGAGGUGCUUCGGGacCUCU--CCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 17323 | 0.66 | 0.673517 |
Target: 5'- -cGACUCCuucuCGAucuccgccagguuGCCCUcgcGGAGGuGGCa -3' miRNA: 3'- caCUGAGGu---GCUu------------CGGGA---CCUCU-CCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 19948 | 0.73 | 0.301864 |
Target: 5'- -gGACUCCAgGGAGgCCUGGAGGa-- -3' miRNA: 3'- caCUGAGGUgCUUCgGGACCUCUccg -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 20118 | 0.69 | 0.486635 |
Target: 5'- cGUGGuCUCCugGGccuccgacaaccAGCgCUGGGacGAGGCg -3' miRNA: 3'- -CACU-GAGGugCU------------UCGgGACCU--CUCCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 23521 | 0.66 | 0.677817 |
Target: 5'- cUGACgggCCAggucgaGGAGCUCUccGGAGAGGg -3' miRNA: 3'- cACUGa--GGUg-----CUUCGGGA--CCUCUCCg -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 26217 | 0.67 | 0.591387 |
Target: 5'- -cGACaUCaACGAAGUCCUGaGAaAGGCg -3' miRNA: 3'- caCUG-AGgUGCUUCGGGAC-CUcUCCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 26753 | 0.7 | 0.437583 |
Target: 5'- -cGGCUUCAUG-AGCgUCUGaGGGAGGCa -3' miRNA: 3'- caCUGAGGUGCuUCG-GGAC-CUCUCCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 31644 | 0.68 | 0.548677 |
Target: 5'- -cGACgugugCCACGGAGCCagUGGuGGcuGGCa -3' miRNA: 3'- caCUGa----GGUGCUUCGGg-ACCuCU--CCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 34013 | 0.7 | 0.418769 |
Target: 5'- aGUGACUCguugcgcaGCGuGGCCUUcucgcGGAGGGGCu -3' miRNA: 3'- -CACUGAGg-------UGCuUCGGGA-----CCUCUCCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 34450 | 0.66 | 0.674593 |
Target: 5'- -gGGCUCUccaaccucguccugACGAucuaCCgUGGGGAGGCg -3' miRNA: 3'- caCUGAGG--------------UGCUuc--GGgACCUCUCCG- -5' |
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31882 | 3' | -56.8 | NC_006938.1 | + | 34595 | 0.69 | 0.476609 |
Target: 5'- aGUGugUCCu---GGCCCUGGuugaAGAGGg -3' miRNA: 3'- -CACugAGGugcuUCGGGACC----UCUCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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