miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31882 3' -56.8 NC_006938.1 + 46554 1.12 0.000492
Target:  5'- aGUGACUCCACGAAGCCCUGGAGAGGCg -3'
miRNA:   3'- -CACUGAGGUGCUUCGGGACCUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 37867 0.66 0.688536
Target:  5'- cUGGCUCCAgGAGaUCCaGGAGAaGCg -3'
miRNA:   3'- cACUGAGGUgCUUcGGGaCCUCUcCG- -5'
31882 3' -56.8 NC_006938.1 + 38949 0.66 0.677817
Target:  5'- -cGACUUCAuccCGGAuGCCCgUGGcGAGGUc -3'
miRNA:   3'- caCUGAGGU---GCUU-CGGG-ACCuCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 34450 0.66 0.674593
Target:  5'- -gGGCUCUccaaccucguccugACGAucuaCCgUGGGGAGGCg -3'
miRNA:   3'- caCUGAGG--------------UGCUuc--GGgACCUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 62732 0.66 0.656263
Target:  5'- -gGACggcaaCUugGAGGCCUcgGGcacGGAGGCg -3'
miRNA:   3'- caCUGa----GGugCUUCGGGa-CC---UCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 7124 0.66 0.65302
Target:  5'- --aGCUCCACGAgcuccguccggagcGGUCCgagcgcucccgcUGGAGAcGGCg -3'
miRNA:   3'- cacUGAGGUGCU--------------UCGGG------------ACCUCU-CCG- -5'
31882 3' -56.8 NC_006938.1 + 45812 0.67 0.623794
Target:  5'- cGUGccacguuCUCCGCGcAGCCCgccgaUGGAGAGa- -3'
miRNA:   3'- -CACu------GAGGUGCuUCGGG-----ACCUCUCcg -5'
31882 3' -56.8 NC_006938.1 + 1226 0.67 0.602167
Target:  5'- -gGACUUCugGccGCCCUGuGGAucGGCu -3'
miRNA:   3'- caCUGAGGugCuuCGGGACcUCU--CCG- -5'
31882 3' -56.8 NC_006938.1 + 26217 0.67 0.591387
Target:  5'- -cGACaUCaACGAAGUCCUGaGAaAGGCg -3'
miRNA:   3'- caCUG-AGgUGCUUCGGGAC-CUcUCCG- -5'
31882 3' -56.8 NC_006938.1 + 44007 0.67 0.590311
Target:  5'- --cGCUCCGCGAuguucaucggucuGGCCUcggcgggaaUGGAGGuGGCa -3'
miRNA:   3'- cacUGAGGUGCU-------------UCGGG---------ACCUCU-CCG- -5'
31882 3' -56.8 NC_006938.1 + 19948 0.73 0.301864
Target:  5'- -gGACUCCAgGGAGgCCUGGAGGa-- -3'
miRNA:   3'- caCUGAGGUgCUUCgGGACCUCUccg -5'
31882 3' -56.8 NC_006938.1 + 16351 0.71 0.365398
Target:  5'- -gGGCUCCAUGGAGCaucGGAuaGAGGCc -3'
miRNA:   3'- caCUGAGGUGCUUCGggaCCU--CUCCG- -5'
31882 3' -56.8 NC_006938.1 + 15125 0.71 0.38266
Target:  5'- cUGACU-CGCGAGaCCCggaacGGAGGGGCg -3'
miRNA:   3'- cACUGAgGUGCUUcGGGa----CCUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 26753 0.7 0.437583
Target:  5'- -cGGCUUCAUG-AGCgUCUGaGGGAGGCa -3'
miRNA:   3'- caCUGAGGUGCuUCG-GGAC-CUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 20118 0.69 0.486635
Target:  5'- cGUGGuCUCCugGGccuccgacaaccAGCgCUGGGacGAGGCg -3'
miRNA:   3'- -CACU-GAGGugCU------------UCGgGACCU--CUCCG- -5'
31882 3' -56.8 NC_006938.1 + 9871 0.68 0.517285
Target:  5'- -aGGcCUCCGuCGAgcuGGCCCaGGAGAagGGCg -3'
miRNA:   3'- caCU-GAGGU-GCU---UCGGGaCCUCU--CCG- -5'
31882 3' -56.8 NC_006938.1 + 40923 0.74 0.247191
Target:  5'- cUGACUCCAgGAAcGCCUUGGcucGGGCg -3'
miRNA:   3'- cACUGAGGUgCUU-CGGGACCuc-UCCG- -5'
31882 3' -56.8 NC_006938.1 + 23521 0.66 0.677817
Target:  5'- cUGACgggCCAggucgaGGAGCUCUccGGAGAGGg -3'
miRNA:   3'- cACUGa--GGUg-----CUUCGGGA--CCUCUCCg -5'
31882 3' -56.8 NC_006938.1 + 17323 0.66 0.673517
Target:  5'- -cGACUCCuucuCGAucuccgccagguuGCCCUcgcGGAGGuGGCa -3'
miRNA:   3'- caCUGAGGu---GCUu------------CGGGA---CCUCU-CCG- -5'
31882 3' -56.8 NC_006938.1 + 37357 0.66 0.667056
Target:  5'- -gGugUCCAUGAcuGCUgU-GAGAGGCa -3'
miRNA:   3'- caCugAGGUGCUu-CGGgAcCUCUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.