miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31894 3' -52.4 NC_006938.1 + 2277 0.66 0.926158
Target:  5'- cCCUCgccCCaGUUGGCGAUCUucACGUCUu -3'
miRNA:   3'- -GGAGa--GG-CAACUGUUGGAccUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 60249 0.66 0.920313
Target:  5'- aCCggCUCCGgcGACAA--UGGuCGUCUg -3'
miRNA:   3'- -GGa-GAGGCaaCUGUUggACCuGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 9175 0.66 0.920313
Target:  5'- gCUCUggccaCCGccgUGGCGcGCagaUGGGCGUCCu -3'
miRNA:   3'- gGAGA-----GGCa--ACUGU-UGg--ACCUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 56977 0.66 0.914197
Target:  5'- ----cCCGUUGACAuaacgaacGCUgGGACGUUCa -3'
miRNA:   3'- ggagaGGCAACUGU--------UGGaCCUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 8465 0.66 0.914197
Target:  5'- aCgUCUCCcc-GGCGuCCUGcGCGUCCg -3'
miRNA:   3'- -GgAGAGGcaaCUGUuGGACcUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 50949 0.66 0.913571
Target:  5'- aUCUCUCCGUcggUGcCGAgCUGGcggagcucgccccGCGUCa -3'
miRNA:   3'- -GGAGAGGCA---ACuGUUgGACC-------------UGCAGg -5'
31894 3' -52.4 NC_006938.1 + 53189 0.66 0.907812
Target:  5'- cCCaCUCCGccgUGAUGuCaaGGGCGUCCg -3'
miRNA:   3'- -GGaGAGGCa--ACUGUuGgaCCUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 35794 0.66 0.901158
Target:  5'- uCC-CUUCGaggGGCAgaccaugcGCCagUGGGCGUCCa -3'
miRNA:   3'- -GGaGAGGCaa-CUGU--------UGG--ACCUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 41573 0.67 0.887062
Target:  5'- gCUCUCUGUguucuugGGCAACCUGccccggaucaACGUCg -3'
miRNA:   3'- gGAGAGGCAa------CUGUUGGACc---------UGCAGg -5'
31894 3' -52.4 NC_006938.1 + 33052 0.67 0.879627
Target:  5'- --gCUCCGUccgUGGCGACCUguacagGGugG-CCg -3'
miRNA:   3'- ggaGAGGCA---ACUGUUGGA------CCugCaGG- -5'
31894 3' -52.4 NC_006938.1 + 53494 0.67 0.877348
Target:  5'- -gUCUCgGUgagGGCAcugcuguccaggaaGCCcaGGACGUCCa -3'
miRNA:   3'- ggAGAGgCAa--CUGU--------------UGGa-CCUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 40474 0.67 0.871942
Target:  5'- aCUcCUCCGacgGACGACCaGGGCcagCCg -3'
miRNA:   3'- gGA-GAGGCaa-CUGUUGGaCCUGca-GG- -5'
31894 3' -52.4 NC_006938.1 + 62724 0.67 0.864013
Target:  5'- -aUCUUCGUggacGGCAACUUGGAgG-CCu -3'
miRNA:   3'- ggAGAGGCAa---CUGUUGGACCUgCaGG- -5'
31894 3' -52.4 NC_006938.1 + 54472 0.67 0.864013
Target:  5'- gUUCUUCGaggUGACGacACCUgGGACGaCCg -3'
miRNA:   3'- gGAGAGGCa--ACUGU--UGGA-CCUGCaGG- -5'
31894 3' -52.4 NC_006938.1 + 17229 0.67 0.863207
Target:  5'- uCCUgUCCGgcGAgGACCuuggugaccuccuUGGACagGUCCu -3'
miRNA:   3'- -GGAgAGGCaaCUgUUGG-------------ACCUG--CAGG- -5'
31894 3' -52.4 NC_006938.1 + 55534 0.68 0.848298
Target:  5'- aCCUCUCCGUcucggcgucgacguaUGGCAcuGCCaucccgaucagcuaUGGcACgGUCCg -3'
miRNA:   3'- -GGAGAGGCA---------------ACUGU--UGG--------------ACC-UG-CAGG- -5'
31894 3' -52.4 NC_006938.1 + 51556 0.68 0.847448
Target:  5'- cCCggCUCCGgccGCGACgaGGAUGUCg -3'
miRNA:   3'- -GGa-GAGGCaacUGUUGgaCCUGCAGg -5'
31894 3' -52.4 NC_006938.1 + 50740 0.68 0.847448
Target:  5'- gCUCUCCGUgaacugGAgGAgguccuCCUGcGACGuUCCa -3'
miRNA:   3'- gGAGAGGCAa-----CUgUU------GGAC-CUGC-AGG- -5'
31894 3' -52.4 NC_006938.1 + 53800 0.68 0.847448
Target:  5'- aCCgaagCUCCGUuggagccacUGGCAcCCUGGGCa-CCg -3'
miRNA:   3'- -GGa---GAGGCA---------ACUGUuGGACCUGcaGG- -5'
31894 3' -52.4 NC_006938.1 + 43062 0.68 0.842303
Target:  5'- --aCUCCGacgaGACGACCgggacgagcuacagcUGGACGUUCa -3'
miRNA:   3'- ggaGAGGCaa--CUGUUGG---------------ACCUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.