Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 62730 | 0.67 | 0.531512 |
Target: 5'- gUGGACGGCAacuuGgagGCCUcgggCACgGAGGCg -3' miRNA: 3'- gACCUGUCGU----Ca--CGGGa---GUGgCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 62054 | 0.67 | 0.541991 |
Target: 5'- uCUGGACGGCGuccagauugGCaCCgaCACUGAGACu -3' miRNA: 3'- -GACCUGUCGUca-------CG-GGa-GUGGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 60980 | 0.66 | 0.621149 |
Target: 5'- cCUGGcccagcaucgacACAGCGGUGgCCUCGauaucgacaacccagUCGAGAUu -3' miRNA: 3'- -GACC------------UGUCGUCACgGGAGU---------------GGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 55896 | 0.68 | 0.490402 |
Target: 5'- -aGGGCuccGGCcaGGUGCCCggaCACCGuGGCc -3' miRNA: 3'- gaCCUG---UCG--UCACGGGa--GUGGCuCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 55636 | 0.79 | 0.092324 |
Target: 5'- -gGGAUGGCAGUGCCauacgucgaCGCCGAGACg -3' miRNA: 3'- gaCCUGUCGUCACGGga-------GUGGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 55380 | 0.68 | 0.487377 |
Target: 5'- aUGGcaucacucgcaauuGCAGCAGUcggcGCgCUCGCCGcAGGCg -3' miRNA: 3'- gACC--------------UGUCGUCA----CGgGAGUGGC-UCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 54501 | 0.71 | 0.29676 |
Target: 5'- -aGGACAGUGGUGgCCUCgacuccgGCCGcGACa -3' miRNA: 3'- gaCCUGUCGUCACgGGAG-------UGGCuCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 53405 | 1.08 | 0.000674 |
Target: 5'- cCUGGACAGCAGUGCCCUCACCGAGACc -3' miRNA: 3'- -GACCUGUCGUCACGGGAGUGGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 48351 | 0.67 | 0.552536 |
Target: 5'- -cGGGCGGCGGUgacgagcgcGUCCUguCgGAGACc -3' miRNA: 3'- gaCCUGUCGUCA---------CGGGAguGgCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 48207 | 0.67 | 0.521109 |
Target: 5'- gUGGACAGCGa-GUCCUCGuuCCGAguGACg -3' miRNA: 3'- gACCUGUCGUcaCGGGAGU--GGCU--CUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 48048 | 0.66 | 0.563143 |
Target: 5'- -cGGACGGCAucacUGagaugCUCACCGAGGCc -3' miRNA: 3'- gaCCUGUCGUc---ACgg---GAGUGGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 46376 | 0.67 | 0.500548 |
Target: 5'- -cGGACGGCGGUGCgaucgacuaCCUCAuCCGGc-- -3' miRNA: 3'- gaCCUGUCGUCACG---------GGAGU-GGCUcug -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 45881 | 0.73 | 0.249809 |
Target: 5'- -cGGACGGCccUGUCCUCGCUGAcGGCg -3' miRNA: 3'- gaCCUGUCGucACGGGAGUGGCU-CUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 41140 | 0.7 | 0.377339 |
Target: 5'- -cGGAggaGGCgAGUGCgCUC-CCGAGACg -3' miRNA: 3'- gaCCUg--UCG-UCACGgGAGuGGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 40680 | 0.66 | 0.606029 |
Target: 5'- -cGGGgAGCGcaugagGUCCUCgACCGAGGCc -3' miRNA: 3'- gaCCUgUCGUca----CGGGAG-UGGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 37612 | 0.67 | 0.510785 |
Target: 5'- gCUGGAgcgaCAGguGgcaGCCCUCACCaAGGa -3' miRNA: 3'- -GACCU----GUCguCa--CGGGAGUGGcUCUg -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 36685 | 0.66 | 0.616826 |
Target: 5'- cCUGGAgAGaCAGaGCCCaCugCGAGGa -3' miRNA: 3'- -GACCUgUC-GUCaCGGGaGugGCUCUg -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 35618 | 0.68 | 0.460563 |
Target: 5'- uCUGGuCAGCGaUGuCCCUCuCCGuGGCg -3' miRNA: 3'- -GACCuGUCGUcAC-GGGAGuGGCuCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 29254 | 0.66 | 0.606029 |
Target: 5'- -aGGcCAGCGGUgGCauaugaCUCGgCCGAGGCc -3' miRNA: 3'- gaCCuGUCGUCA-CGg-----GAGU-GGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 28366 | 0.66 | 0.610346 |
Target: 5'- gCUGGACAGCuGUcccuccggccGCCCUacacggucaacccggCACCGGaguGGCg -3' miRNA: 3'- -GACCUGUCGuCA----------CGGGA---------------GUGGCU---CUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home