miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31896 5' -56.2 NC_006938.1 + 16054 0.68 0.632815
Target:  5'- aGAGGAUCUCgACCgcgUCGGCGuAUCGGGc -3'
miRNA:   3'- gUUCCUGGAG-UGG---AGCUGCcUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 53172 0.68 0.61141
Target:  5'- uCAAGGGCgUCcgauCCaaaGCGGACCGGGa -3'
miRNA:   3'- -GUUCCUGgAGu---GGagcUGCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 26659 0.68 0.600729
Target:  5'- aCGAGGGCCuuguccagguUCGCCUCGGuggcguaGGACUuGGa -3'
miRNA:   3'- -GUUCCUGG----------AGUGGAGCUg------CCUGGuCC- -5'
31896 5' -56.2 NC_006938.1 + 2997 0.68 0.590073
Target:  5'- --cGGACCUgauggACCU-GACGGACCGGu -3'
miRNA:   3'- guuCCUGGAg----UGGAgCUGCCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 1407 0.69 0.57945
Target:  5'- gCGGGGAUCggagacaCGCCggUCGccACGGGCCGGGu -3'
miRNA:   3'- -GUUCCUGGa------GUGG--AGC--UGCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 46898 0.69 0.57945
Target:  5'- aGAGGAuCCggACgUCGGCGGGCUgcAGGa -3'
miRNA:   3'- gUUCCU-GGagUGgAGCUGCCUGG--UCC- -5'
31896 5' -56.2 NC_006938.1 + 35728 0.69 0.568869
Target:  5'- --cGcGCCaCACCUCGGCGGAcuucuCCAGGc -3'
miRNA:   3'- guuCcUGGaGUGGAGCUGCCU-----GGUCC- -5'
31896 5' -56.2 NC_006938.1 + 55515 0.69 0.54786
Target:  5'- gAGGGGCCaCGCCUCGGC-GACCu-- -3'
miRNA:   3'- gUUCCUGGaGUGGAGCUGcCUGGucc -5'
31896 5' -56.2 NC_006938.1 + 2423 0.7 0.506643
Target:  5'- ---uGACCUCGuCCUCGACGGaguccuccccGCCgAGGa -3'
miRNA:   3'- guucCUGGAGU-GGAGCUGCC----------UGG-UCC- -5'
31896 5' -56.2 NC_006938.1 + 31839 0.7 0.496542
Target:  5'- --uGGACCUC-CCagUGGCGGACCAc- -3'
miRNA:   3'- guuCCUGGAGuGGa-GCUGCCUGGUcc -5'
31896 5' -56.2 NC_006938.1 + 31200 0.7 0.486532
Target:  5'- -cGGGACCUgauggACCU-GACGGACCGGu -3'
miRNA:   3'- guUCCUGGAg----UGGAgCUGCCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 40463 0.71 0.4571
Target:  5'- uCGGGGACgaCAcuCCUcCGACGGAcgaCCAGGg -3'
miRNA:   3'- -GUUCCUGgaGU--GGA-GCUGCCU---GGUCC- -5'
31896 5' -56.2 NC_006938.1 + 51457 0.71 0.438018
Target:  5'- gGAGGGCUUCGacauCCUCGucGCGGccggaGCCGGGg -3'
miRNA:   3'- gUUCCUGGAGU----GGAGC--UGCC-----UGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 36647 0.72 0.38365
Target:  5'- uCGAGG-CCUgccgcgcggaaCGCCgacgucucgCGACGGGCCAGGu -3'
miRNA:   3'- -GUUCCuGGA-----------GUGGa--------GCUGCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 8207 0.72 0.375033
Target:  5'- cCAGGGgcagACCUCuguCCUCG-CGGACgCGGGu -3'
miRNA:   3'- -GUUCC----UGGAGu--GGAGCuGCCUG-GUCC- -5'
31896 5' -56.2 NC_006938.1 + 19545 0.73 0.32614
Target:  5'- uCGGGGACUgcgugUGCCUCG-CGGACgGGGa -3'
miRNA:   3'- -GUUCCUGGa----GUGGAGCuGCCUGgUCC- -5'
31896 5' -56.2 NC_006938.1 + 17145 0.75 0.268555
Target:  5'- cCAAGGuCCUCGCCg-GACaGGACCuGGa -3'
miRNA:   3'- -GUUCCuGGAGUGGagCUG-CCUGGuCC- -5'
31896 5' -56.2 NC_006938.1 + 42270 0.75 0.249175
Target:  5'- gCAAGGACCUCGCagaUCGGacccuuccaGGACCGGu -3'
miRNA:   3'- -GUUCCUGGAGUGg--AGCUg--------CCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 40595 0.75 0.249175
Target:  5'- uCGAGGACCUCAUgcgCUCcccggagcuGGCGGACCGGu -3'
miRNA:   3'- -GUUCCUGGAGUG---GAG---------CUGCCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 38734 0.75 0.24855
Target:  5'- -cGGGAuCCUCACCUgccagagCGGCGG-CCAGGu -3'
miRNA:   3'- guUCCU-GGAGUGGA-------GCUGCCuGGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.