Results 41 - 60 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 21699 | 0.69 | 0.489058 |
Target: 5'- gCGUGACuGUgAGCGACGGCaaCUCCaGCCc -3' miRNA: 3'- aGCGCUG-CGgUCGUUGUUG--GAGG-CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 38544 | 0.69 | 0.489058 |
Target: 5'- aCGCcGCGaUCGGCAACGACUcgaCGCCg -3' miRNA: 3'- aGCGcUGC-GGUCGUUGUUGGag-GCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 9329 | 0.69 | 0.49912 |
Target: 5'- aCGaCGAUGUCAGUucCAACCUgCGUCc -3' miRNA: 3'- aGC-GCUGCGGUCGuuGUUGGAgGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 60689 | 0.69 | 0.49912 |
Target: 5'- -gGCGGCccGCCAGUcGCGACCUCggaGCg -3' miRNA: 3'- agCGCUG--CGGUCGuUGUUGGAGg--CGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 19903 | 0.69 | 0.49912 |
Target: 5'- cCGCGugGUUGGCAugggauacaACGGCUUCC-CCg -3' miRNA: 3'- aGCGCugCGGUCGU---------UGUUGGAGGcGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 41115 | 0.69 | 0.49912 |
Target: 5'- gUCGgGGCcucuGCCAucGCAACGACCauccCCGCUg -3' miRNA: 3'- -AGCgCUG----CGGU--CGUUGUUGGa---GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 42432 | 0.69 | 0.513358 |
Target: 5'- cUCGUGGCccgcgcgggacuccaGCCAGUcgGACAGCaUCCGCUc -3' miRNA: 3'- -AGCGCUG---------------CGGUCG--UUGUUGgAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 562 | 0.69 | 0.518484 |
Target: 5'- aCGCGAUcgacaugugggagGCCGGUgccGAgAGgCUCCGCCu -3' miRNA: 3'- aGCGCUG-------------CGGUCG---UUgUUgGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 13012 | 0.69 | 0.518484 |
Target: 5'- gUGCGAuuagagaUGCCaaagaGGCGAUcaguGACCUCUGCCa -3' miRNA: 3'- aGCGCU-------GCGG-----UCGUUG----UUGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 57440 | 0.69 | 0.519511 |
Target: 5'- cCGUGGCuCCGGCAuagucGCcccauGCCUCgGCCa -3' miRNA: 3'- aGCGCUGcGGUCGU-----UGu----UGGAGgCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 1720 | 0.69 | 0.519511 |
Target: 5'- gCGaCGACGCCAugGACAGCUcCgGCCg -3' miRNA: 3'- aGC-GCUGCGGUcgUUGUUGGaGgCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 51288 | 0.69 | 0.519511 |
Target: 5'- gCGCGuucCGCCAGCucgccACGACCgugCagGCCg -3' miRNA: 3'- aGCGCu--GCGGUCGu----UGUUGGa--Gg-CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 51973 | 0.69 | 0.519511 |
Target: 5'- cUCcCGACGgaAGCcaaaGGCCUCCGCCa -3' miRNA: 3'- -AGcGCUGCggUCGuug-UUGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 16163 | 0.69 | 0.52054 |
Target: 5'- aCGCGGCGCuacgacgucgcaCAGCAcuccuggaacaugcuCAACCUCgCGCUg -3' miRNA: 3'- aGCGCUGCG------------GUCGUu--------------GUUGGAG-GCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 49308 | 0.68 | 0.52983 |
Target: 5'- cUUGUGaguGCGCCAGacggAGCAcCCUCCgGCCg -3' miRNA: 3'- -AGCGC---UGCGGUCg---UUGUuGGAGG-CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 1323 | 0.68 | 0.52983 |
Target: 5'- gCGUGGCaucGCCuuGGCAGCAagGCCgccgUCGCCa -3' miRNA: 3'- aGCGCUG---CGG--UCGUUGU--UGGa---GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 23683 | 0.68 | 0.52983 |
Target: 5'- gCGCGACGUCGGCcagGGCGGCa-UgGCCg -3' miRNA: 3'- aGCGCUGCGGUCG---UUGUUGgaGgCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 11610 | 0.68 | 0.52983 |
Target: 5'- uUCGCGGCagauCgGGCGGCAccGCCgagcccaCCGCCg -3' miRNA: 3'- -AGCGCUGc---GgUCGUUGU--UGGa------GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 28049 | 0.68 | 0.52983 |
Target: 5'- --uCGAUGCCaagGGCGACAGCaagCCGCUg -3' miRNA: 3'- agcGCUGCGG---UCGUUGUUGga-GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 12537 | 0.68 | 0.52983 |
Target: 5'- aCGCGGCGgaggccCCGGUGGCAGCgUCgaacgCGCCg -3' miRNA: 3'- aGCGCUGC------GGUCGUUGUUGgAG-----GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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