Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31898 | 3' | -62.1 | NC_006938.1 | + | 17478 | 0.66 | 0.400572 |
Target: 5'- aUGUCGUuuccGGCCGugccGUCugccuGGGCCACCAg -3' miRNA: 3'- -ACAGCG----CCGGCcu--CAGc----UCCGGUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 15798 | 0.71 | 0.201701 |
Target: 5'- -cUC-CGGCCGGAGgaGAGGCCuCCAg -3' miRNA: 3'- acAGcGCCGGCCUCagCUCCGGuGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 15653 | 0.7 | 0.246103 |
Target: 5'- aG-CGCGGUCGGcGUCGAGGUCGg-- -3' miRNA: 3'- aCaGCGCCGGCCuCAGCUCCGGUggu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 13585 | 0.79 | 0.049038 |
Target: 5'- aG-CGCGGCCGGAGUCGAcaggaguggaGGUCACUAc -3' miRNA: 3'- aCaGCGCCGGCCUCAGCU----------CCGGUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 13536 | 0.66 | 0.41817 |
Target: 5'- -cUCGCGuuCCaGAGgCGGGGCCACCc -3' miRNA: 3'- acAGCGCc-GGcCUCaGCUCCGGUGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 9116 | 0.67 | 0.342834 |
Target: 5'- cUGUCGUugaaGuCCGGGGUCGucaGGGCCGCgAg -3' miRNA: 3'- -ACAGCGc---C-GGCCUCAGC---UCCGGUGgU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 1052 | 0.69 | 0.2845 |
Target: 5'- gUGUCGCGGC--GAG-CGAGGUCGuCCGg -3' miRNA: 3'- -ACAGCGCCGgcCUCaGCUCCGGU-GGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 968 | 0.66 | 0.436231 |
Target: 5'- gUGUC-CaGCCGGAG-C-AGGCCACUg -3' miRNA: 3'- -ACAGcGcCGGCCUCaGcUCCGGUGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 803 | 0.66 | 0.430765 |
Target: 5'- gUGUUGCcaGCCGGuGUggccgccuccgugccCGAGGCCuCCAa -3' miRNA: 3'- -ACAGCGc-CGGCCuCA---------------GCUCCGGuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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