Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31898 | 3' | -62.1 | NC_006938.1 | + | 37525 | 0.67 | 0.350705 |
Target: 5'- cGcCGCcGCUGGcaagcuGGaCGAGGCCGCCAu -3' miRNA: 3'- aCaGCGcCGGCC------UCaGCUCCGGUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 38932 | 0.71 | 0.182223 |
Target: 5'- aUGcCGUGGCCGGGGUCGuAGcGCCGg-- -3' miRNA: 3'- -ACaGCGCCGGCCUCAGC-UC-CGGUggu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 41854 | 0.67 | 0.358703 |
Target: 5'- cUGUCG-GGCUGGAGUUGccGUCGCUc -3' miRNA: 3'- -ACAGCgCCGGCCUCAGCucCGGUGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 42423 | 0.74 | 0.12999 |
Target: 5'- cGaCGCGGCCGGAG-CGAcGCCuGCCAc -3' miRNA: 3'- aCaGCGCCGGCCUCaGCUcCGG-UGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 45038 | 0.69 | 0.277786 |
Target: 5'- aGUCGagGGCCGccca-GAGGCCACCGu -3' miRNA: 3'- aCAGCg-CCGGCcucagCUCCGGUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 51475 | 0.84 | 0.023805 |
Target: 5'- cGUCGCGGCCGGAgccggggcaGUCGAGGCgAUCGu -3' miRNA: 3'- aCAGCGCCGGCCU---------CAGCUCCGgUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 54405 | 1.07 | 0.000376 |
Target: 5'- cUGUCGCGGCCGGAGUCGAGGCCACCAc -3' miRNA: 3'- -ACAGCGCCGGCCUCAGCUCCGGUGGU- -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 56343 | 0.66 | 0.409312 |
Target: 5'- gUGUUGC-GCCGGAGcUCcAGGCCcugcGCCu -3' miRNA: 3'- -ACAGCGcCGGCCUC-AGcUCCGG----UGGu -5' |
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31898 | 3' | -62.1 | NC_006938.1 | + | 61151 | 0.67 | 0.335091 |
Target: 5'- cUGUCGUGGUUcGAGUUGAcGaCCACCAu -3' miRNA: 3'- -ACAGCGCCGGcCUCAGCUcC-GGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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